Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0371
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061)                   30   1.6  
SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   29   2.2  
SB_28361| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   2.2  
SB_48398| Best HMM Match : BBE (HMM E-Value=4.1)                       28   5.0  
SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 27   8.7  
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          27   8.7  
SB_7972| Best HMM Match : RVT_1 (HMM E-Value=5.8e-29)                  27   8.7  
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 27   8.7  
SB_11851| Best HMM Match : IncFII_repA (HMM E-Value=1.4)               27   8.7  

>SB_58610| Best HMM Match : RVT_1 (HMM E-Value=0.061)
          Length = 1445

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = -2

Query: 384  INLVIYVGHRGIL*SKMTTKLIQITKAILNKFYIMARVITDTTEIASIFNNYYIEITNDE 205
            +NL     H GI    +T +L  ITK        +    T   ++ +I ++Y  E++ ++
Sbjct: 1280 VNLAFSARHVGISIWVITQQLTSITKPFRENIAALVVFYTSKADMKAILHDYGAELSEEK 1339

Query: 204  NKNY 193
             K Y
Sbjct: 1340 MKEY 1343


>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 444 WYFLYLIFELVVLFFIYEYLSFLLLTHDFFIPVV 545
           ++FL+++F  VV  FI+ +   + + + FF+ VV
Sbjct: 692 YFFLFVVFAFVVFIFIFFFAFVIFVFNAFFVFVV 725


>SB_28361| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 551

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 426 HDFNILWYFLYLIFELVVLFFIYEYL 503
           H+ ++ W F+ L+F LV+L  IY YL
Sbjct: 280 HERHLYWLFVGLLFLLVLLVIIYLYL 305


>SB_48398| Best HMM Match : BBE (HMM E-Value=4.1)
          Length = 243

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 598 PFRKIKIDNHKSQKTLWITTGIKKSCVSKRKL 503
           P +K+     K     WITTGIK S   K KL
Sbjct: 160 PLKKLSRKEIKFLSKPWITTGIKHSIAIKNKL 191


>SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 669

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -2

Query: 384 INLVIYVGHRGIL*SKMTTKLIQITKAILNKFYIMARVITDT-TEIASIFNNYYIEITND 208
           +NL     H GI    +T +LI ITK        +    T +  ++ +I ++Y  E++ +
Sbjct: 171 VNLAFSAPHVGISVWVITQQLISITKPFREDIAALVVFYTPSKADMKAILHDYGAELSEE 230

Query: 207 ENKNY 193
           + K Y
Sbjct: 231 KMKEY 235


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 447  YFLYLIFELVVLFFIYEYLSFLLLTHDFFIPVVIH 551
            YF  +I    +   I  +  F ++TH FF  ++ H
Sbjct: 946  YFFVIITHHYIFSIITHHYFFSIITHHFFFSIITH 980


>SB_7972| Best HMM Match : RVT_1 (HMM E-Value=5.8e-29)
          Length = 382

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 306 AILNKFYIMARVITDTTEIASIFNNYYIEI 217
           +I +K      V+TD T I++ FNNY+  I
Sbjct: 33  SIPSKIITSDSVLTDPTAISNAFNNYFTNI 62


>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 953

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -2

Query: 384 INLVIYVGHRGIL*SKMTTKLIQITKAILNKFYIMARVITDT-TEIASIFNNYYIEITND 208
           +NL     H GI    +T +LI ITK        +    T +  ++ +I ++Y  E++ +
Sbjct: 371 VNLAFSAPHVGISVWVITQQLISITKPFREDIAALVVFYTPSKADMKAILHDYGAELSEE 430

Query: 207 ENKNY 193
           + K Y
Sbjct: 431 KMKEY 435


>SB_11851| Best HMM Match : IncFII_repA (HMM E-Value=1.4)
          Length = 401

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 306 AILNKFYIMARVITDTTEIASIFNNYYIEI 217
           +I +K      V+TD T I++ FNNY+  I
Sbjct: 110 SIPSKIITSDSVLTDPTAISNAFNNYFTNI 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,763,457
Number of Sequences: 59808
Number of extensions: 155886
Number of successful extensions: 350
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)