Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0371
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024799-8|AAW88387.1|  297|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF040659-3|AAK39392.1|  919|Caenorhabditis elegans Hypothetical ...    27   7.7  
AF040659-2|AAK39393.1|  873|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AC024799-8|AAW88387.1|  297|Caenorhabditis elegans Hypothetical
           protein Y49C4A.2 protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +3

Query: 369 ILLDLFI*CSFLIF*AVIMHDFNILWYFLYLIFELVVLFFIYEYLSFL--LLTHDFFIPV 542
           I+L+L + C F++  +   +D ++ ++   L   L + FFIY   SFL  L   D+   +
Sbjct: 20  IILNLNLICKFVLNNSKRKNDMHLFYFRFVLDILLGISFFIYIGFSFLLELFPEDYLFLI 79

Query: 543 VI 548
           V+
Sbjct: 80  VL 81


>Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 417 VIMHDFNILWYFLY--LIFELVVLFFIYEYLS 506
           V++H F+ LWYF+   L+F LV   F ++ +S
Sbjct: 339 VLVHQFDNLWYFVAVPLLFSLVGYTFDFQNMS 370


>Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 417 VIMHDFNILWYFLY--LIFELVVLFFIYEYLS 506
           V++H F+ LWYF+   L+F LV   F ++ +S
Sbjct: 339 VLVHQFDNLWYFVAVPLLFSLVGYTFDFQNMS 370


>AF040659-3|AAK39392.1|  919|Caenorhabditis elegans Hypothetical
           protein ZK484.4a protein.
          Length = 919

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -2

Query: 327 KLIQITKAILNKFYIMARVITDTTE---IASIFNNYYIEITNDE 205
           +L +I  A L K+   A ++    E   +A +F  YY+E+ +DE
Sbjct: 160 RLAEIRAARLKKYRENAEIVEFKCEENCLAEVFTKYYLELLDDE 203


>AF040659-2|AAK39393.1|  873|Caenorhabditis elegans Hypothetical
           protein ZK484.4b protein.
          Length = 873

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -2

Query: 327 KLIQITKAILNKFYIMARVITDTTE---IASIFNNYYIEITNDE 205
           +L +I  A L K+   A ++    E   +A +F  YY+E+ +DE
Sbjct: 160 RLAEIRAARLKKYRENAEIVEFKCEENCLAEVFTKYYLELLDDE 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,207,305
Number of Sequences: 27780
Number of extensions: 133121
Number of successful extensions: 302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)