Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0369
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...   108   5e-25
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    29   0.39 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.7  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   6.3  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score =  108 bits (260), Expect = 5e-25
 Identities = 45/95 (47%), Positives = 66/95 (69%)
 Frame = +3

Query: 312 VFAGAHRLWSHNGYKVKLPLEILLMVFNSIAFQNTIFTWVRDHRLHHKYTDTDADPHNAT 491
           + AG HRLWSH  YK K PLE  L    + AF+ +I  W RDHR HH+YTDTD DP+N  
Sbjct: 105 ITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNVK 164

Query: 492 RGFFFSHIGWLLVRKHPMVKIAGKSLDMSDIYCNP 596
           +GF+++H+GW+++ ++P  +  G+S D+SD+  +P
Sbjct: 165 KGFWYAHVGWMIILQNP--RRIGRS-DVSDLNSDP 196


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 443 PVISHPCENGVLKSNTVEDHQQDLEGQFDFVT 348
           P I    EN + +SNTVE+  +++E QF+ V+
Sbjct: 297 PEIHESSENYLSRSNTVENEPENIEKQFESVS 328


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 525  TTSRCVRKKNLS*HYEGLHQC 463
            T +  V KKN+S H+EG+ +C
Sbjct: 1538 TDALLVLKKNISMHFEGVEEC 1558


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 564 SFQQFSPLDVFAPTTSRCVRKKN 496
           SF   +PL VFAP TSR +R  N
Sbjct: 201 SFDPLAPL-VFAPNTSRVLRVTN 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,418
Number of Sequences: 5004
Number of extensions: 50462
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)