Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0369
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138...    29   2.8  
05_02_0072 - 6334613-6335215                                           28   4.9  
11_06_0647 + 25870470-25870744,25870765-25871533                       27   8.6  
07_03_0946 - 22798055-22798742,22799746-22799810                       27   8.6  
03_05_0186 + 21731294-21732277                                         27   8.6  

>01_01_0161 -
           1385408-1385566,1385815-1385943,1386164-1386322,
           1387228-1387571,1387641-1387905,1387998-1388075,
           1388207-1388260,1389341-1389361,1389453-1389578,
           1389696-1389863,1389923-1390313,1390629-1390710,
           1391175-1391536,1391806-1392630,1392956-1393476
          Length = 1227

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +3

Query: 345 NGYKVKLPLEI-LLMVFNSIAFQNTIFTWVRDHRLHHKYTDTDADPHNATRGFFFSHIGW 521
           N Y V+  LE  LL +F  + F NT    V    +H+ +   DA+P N      F+ IG 
Sbjct: 736 NEYSVRRALEAYLLWLFGWVMFTNTHGHAVDKGLIHYAWAIVDAEPENLWATERFA-IGR 794

Query: 522 LLVRKHPMVKIAGKSLD 572
           L+V   P     G+S +
Sbjct: 795 LVV--DPTAYTIGRSAE 809


>05_02_0072 - 6334613-6335215
          Length = 200

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 495 GFFFSHIGWLLVRKHPMVKIAGKSLDMSDIYC 590
           GF  SH+   L+R HP  ++   +LD  D YC
Sbjct: 33  GFIASHVANRLLRDHPSYRVV--ALDKLDDYC 62


>11_06_0647 + 25870470-25870744,25870765-25871533
          Length = 347

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 144 IPQGIIMLIMKNSLH-PRA-SPIKHKIVVMNVIRFSYLHIAGLYGLYL 281
           +P G ++ I    L+ P+   P K +I +++ IR  Y HI  LY  Y+
Sbjct: 4   LPDGRVVAIKHRGLNSPQGMEPFKAEIAILSAIR--YKHIVPLYSYYV 49


>07_03_0946 - 22798055-22798742,22799746-22799810
          Length = 250

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/58 (18%), Positives = 27/58 (46%)
 Frame = +1

Query: 253 ILLVYMDFISVSPQQNWLHRFLLELIVCGLIMVTKSNCPSRSC*WSSTVLLFRTPFSH 426
           +L+++M       ++ W   FL   ++  +++ T S   +  C W  +++   TP  +
Sbjct: 148 LLVIFMTVYFFVVRRKWSPHFLRFHVILAILLDTGSQAVATMCTWMPSIVYQGTPMQY 205


>03_05_0186 + 21731294-21732277
          Length = 327

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 246 YLHIAGLYGLYLCFTSAKLATSVFAGAHRLWSHNG---YKVKLP 368
           YL +  L G+Y   T  KLA   F G +++ S  G   Y+++LP
Sbjct: 269 YLRVTPLRGVYRFHTKGKLAPR-FVGPYKIVSRRGEVAYQLELP 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,126,939
Number of Sequences: 37544
Number of extensions: 300201
Number of successful extensions: 592
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)