Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0368
         (567 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.2  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   5.6  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   7.3  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   7.3  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   7.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 13/55 (23%), Positives = 22/55 (40%)
 Frame = +2

Query: 83  DSSGKSGAKFYQSYDRLFILKTLTSEEVERMHSFLKHYHPYIVERHGKTLLPQYL 247
           D+S     K      R++   T+  E  E M  FLK       ++  + +  +YL
Sbjct: 547 DASSAKAVKNSDHITRIYACATMWHENKEEMMEFLKSILRLDEDQSARRVAQKYL 601


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 13/55 (23%), Positives = 22/55 (40%)
 Frame = +2

Query: 83  DSSGKSGAKFYQSYDRLFILKTLTSEEVERMHSFLKHYHPYIVERHGKTLLPQYL 247
           D+S     K      R++   T+  E  E M  FLK       ++  + +  +YL
Sbjct: 547 DASSAKAVKNSDHITRIYACATMWHENKEEMMEFLKSILRLDEDQSARRVAQKYL 601


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 13/55 (23%), Positives = 22/55 (40%)
 Frame = +2

Query: 83  DSSGKSGAKFYQSYDRLFILKTLTSEEVERMHSFLKHYHPYIVERHGKTLLPQYL 247
           D+S     K      R++   T+  E  E M  FLK       ++  + +  +YL
Sbjct: 547 DASSAKAVKNSDHITRIYACATMWHENKEEMMEFLKSILRLDEDQSARRVAQKYL 601


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 13/55 (23%), Positives = 22/55 (40%)
 Frame = +2

Query: 83  DSSGKSGAKFYQSYDRLFILKTLTSEEVERMHSFLKHYHPYIVERHGKTLLPQYL 247
           D+S     K      R++   T+  E  E M  FLK       ++  + +  +YL
Sbjct: 547 DASSAKAVKNSDHITRIYACATMWHENKEEMMEFLKSILRLDEDQSARRVAQKYL 601


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +2

Query: 128 RLFILKTLTSEEVERMHSFLKHYHPYIVERHGKTLLPQYLGM 253
           R++ + T+  E  E M  FLK       ++    ++ ++LG+
Sbjct: 301 RIYAIATMWHETPEEMMEFLKSVFRLDQDQCSHRIVREHLGL 342


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 422 FLKQGVRIDIGEAAKEKLLETLTADVEFLTKLHLM 526
           F  QG     G + K   +ETL   VE++  L  M
Sbjct: 120 FAPQGPSTGRGASKKLSKVETLRLAVEYIRSLKQM 154


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 257 GTCPSTAGAGSCRASPRCMDDSASETNASSP 165
           G+  S+ GAGS   SP+     A    A SP
Sbjct: 93  GSEMSSPGAGSGNLSPQIQTQVARPPPARSP 123


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 257 GTCPSTAGAGSCRASPRCMDDSASETNASSP 165
           G+  S+ GAGS   SP+     A    A SP
Sbjct: 93  GSEMSSPGAGSGNLSPQIQTQVARPPPARSP 123


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 162 SSEVRVFRMNRR 127
           SSEV +FRM RR
Sbjct: 395 SSEVMMFRMARR 406


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,982
Number of Sequences: 336
Number of extensions: 2316
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)