Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0368
(567 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 107 8e-25
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 60 2e-10
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 28 0.83
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 27 2.5
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 2.5
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr... 26 3.4
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 26 3.4
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 26 4.4
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.9
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 25 5.9
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 25 7.7
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 25 7.7
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 107 bits (258), Expect = 8e-25
Identities = 56/163 (34%), Positives = 96/163 (58%), Gaps = 2/163 (1%)
Frame = +2
Query: 83 DSSGKSGAKFYQSYDRLFILKTLTSEEVERMHSFLKHYHPYIVERHGKTLLPQYLGMYRL 262
DS GKSG+ FY S D FI+KT+ E + + L Y+ + V+ + TL+ Q+ G++R+
Sbjct: 359 DSPGKSGSFFYFSRDYRFIIKTIHHSEHKFLREILYDYYEH-VKNNPNTLISQFYGLHRV 417
Query: 263 TVD-GIEHYLVATRNVFSNHLNIHRKYDLKGSTVDREASXXXXXXXXP-TLKDNDFLKQG 436
+ G + + V N+F H +IH+ +DLKGST+ RE T+KD +++++
Sbjct: 418 KLPFGRKIHFVVMNNLFPPHRDIHQTFDLKGSTLGRELDENQPCQSPMCTMKDTNWIRRN 477
Query: 437 VRIDIGEAAKEKLLETLTADVEFLTKLHLMDYSLLLGVHECGR 565
+ + G ++ L + AD++ L+ L +MDYSLL+G+H+ R
Sbjct: 478 MHLQFGPLKRQIFLTQVKADIDMLSSLGIMDYSLLVGIHDLSR 520
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 60.1 bits (139), Expect = 2e-10
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Frame = +2
Query: 80 DDSSGKSGAKFYQSYDRLFILKTLTSEEVERMHSFLKHYHPYIVE---RHGKTLLPQYLG 250
+ S GKSG+ F +++D+ +ILK L+ E + + +F Y YI + T L + G
Sbjct: 1692 ESSGGKSGSAFLKTFDKKYILKVLSRLESDSLLNFAPAYFDYISKVFFHELPTALTKIFG 1751
Query: 251 MYRLTVDG------IEHYLVATRNVFSNHLNIHRKYDLKGSTVDREASXXXXXXXXPTLK 412
YR+ + + ++ NVF + R +DLKGS +R +
Sbjct: 1752 FYRVDIRNPTTGTICKTDIMIMENVFYDECP-SRIFDLKGSMRNRHVESTGKVDEVLLDE 1810
Query: 413 DNDFLKQGVRIDIGEAAKEKLLETLTADVEFLTKLHLMDYSLLLGV 550
+ L I + E K L L D FL+KL++MDYSL++G+
Sbjct: 1811 NLVELIYESPIFVSEQLKSLLHSCLWNDTLFLSKLNIMDYSLIVGI 1856
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 28.3 bits (60), Expect = 0.83
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +2
Query: 122 YDRLFILKTLTSEEVERMHSFLKH-YHPYIVERHGK-TLLPQYLGMYRLT-VDGIEHYLV 292
Y F L++LTSE E FLK H Y ++ + ++ YL + L+ D +++
Sbjct: 376 YSVAFFLRSLTSENDELSSKFLKQIIHAYTHKQDNRLNIIQGYLDLVHLSDQDQYDNWFT 435
Query: 293 ATRNVFSNHLNIHRKY 340
+T + N RKY
Sbjct: 436 STILTYLVIDNDQRKY 451
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 229 GLAVPLHDVWMIVLQKRMHPLHLFRSQGLQDEQAIVALVE 110
G AVPL + I L K + PLH +S L Q +V+
Sbjct: 414 GFAVPLKEEHKIFLSKVLIPLHQTKSVFLYHPQLTYCIVQ 453
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 221 GKTLLPQYLGMYRLTVDGIEHYLVATRNV 307
GKT+ +Y+ Y +V G++H V R+V
Sbjct: 164 GKTVAAKYIMRYLTSVQGVDHNGVVKRSV 192
>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 185 LKHYHPYIVERHGKTLLPQYLGMYRLTVDGIEHYLVA 295
L + + +E+HGK+ L + LTV +E+ L+A
Sbjct: 55 LSEMNDWCIEQHGKSGLTERCRQSNLTVKDVENQLLA 91
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +2
Query: 158 EEVERMHSFLKHYHPYIVERHGKTLLPQYLGMYRLTVDGIEHYLVATRNVFSNHLN 325
+ V R H+ K + Y++ H + L+P GI+ L+ ++ + LN
Sbjct: 133 KNVRRTHAEFKKFAKYLISTHPECLIPAVPEAKTSVSSGIKEDLIYLKSGLQSWLN 188
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 173 MHSFLKHYHPYIVERHGKTLL--PQYLGMYRLTVDGIEHYL 289
+H FL H+HP V K+L+ + LG L++ + H+L
Sbjct: 593 IHPFLNHFHP-TVSLLAKSLVYGEKILGKPNLSLHTLNHFL 632
>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 248 PSTAGAGSCRASPRCMDDSASETNASSPPLQK 153
PS A A+PR + S+S ++ASSPPL++
Sbjct: 73 PSNLKASYIPANPRRL--SSSTSSASSPPLRR 102
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 5.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 179 SFLKHYHPYIVERHGKTLLP 238
SFLK ++P I +R+G T+ P
Sbjct: 196 SFLKKFNPDIFDRNGVTVCP 215
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 229 GLAVPLHDVWMIVLQKRMHPLHLFRSQGL---QDEQAIVALVELRTRLTGRIV 80
G A+PL + I L + + PLH +S L Q IV VE + +T +V
Sbjct: 313 GFALPLKEEHKIFLSRVLIPLHKAKSLPLYYPQIAYGIVQFVEKDSSVTEEVV 365
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.0 bits (52), Expect = 7.7
Identities = 8/34 (23%), Positives = 21/34 (61%)
Frame = +2
Query: 146 TLTSEEVERMHSFLKHYHPYIVERHGKTLLPQYL 247
+++ E + R+ ++++P+ + GK L+P +L
Sbjct: 672 SISDEALARLCREFQYFYPFDIRASGKDLVPNHL 705
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,040
Number of Sequences: 5004
Number of extensions: 38689
Number of successful extensions: 130
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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