Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0368
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)                      200   5e-52
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)                       46   2e-05
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_16820| Best HMM Match : BRF1 (HMM E-Value=0.2)                      29   2.0  
SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)         29   3.5  
SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12)                 28   6.1  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   8.1  

>SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 426

 Score =  200 bits (489), Expect = 5e-52
 Identities = 91/162 (56%), Positives = 120/162 (74%)
 Frame = +2

Query: 74  VADDSSGKSGAKFYQSYDRLFILKTLTSEEVERMHSFLKHYHPYIVERHGKTLLPQYLGM 253
           ++ DS G+SGAKF+ S ++ F +K + SEEVER+H+ L+ YH +IVE+H  TLLPQYL M
Sbjct: 124 ISSDSPGRSGAKFFLSQNKRFYVKVIESEEVERLHNILQPYHHHIVEQHANTLLPQYLAM 183

Query: 254 YRLTVDGIEHYLVATRNVFSNHLNIHRKYDLKGSTVDREASXXXXXXXXPTLKDNDFLKQ 433
           YR+TVDG E Y++   +VFS  L IH+KYDLKGSTVDR+AS        PT KDNDF K 
Sbjct: 184 YRVTVDGKESYMLVMTSVFSTRLKIHKKYDLKGSTVDRQASLKEKTRDNPTFKDNDFTKD 243

Query: 434 GVRIDIGEAAKEKLLETLTADVEFLTKLHLMDYSLLLGVHEC 559
            V++ IG+ AK  L+E + ADVEFL  L++MDYSLL+G+H+C
Sbjct: 244 NVKLVIGDEAKAVLVERIKADVEFLISLNIMDYSLLVGIHDC 285


>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 2119

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 12/168 (7%)
 Frame = +2

Query: 89   SGKSGAKFYQSYDRLFILKTLTSEEVERMHSFLKHYHPYI---VERHGKTLLPQYLGMYR 259
            +G+    F+      F+LK ++  E++    F  +Y  Y+   +      LL + LG+YR
Sbjct: 1882 TGQEPLNFHIKMHDRFVLKQMSKLELQSFLEFAPYYFQYMNKSLNDKRPPLLAKILGVYR 1941

Query: 260  ------LTVDGIEHYLVATRNVFSNHLNIHRKYDLKGSTVDREASXXXXXXXXPTLKDND 421
                  LT   +   +V   N+F +   I   +DLKGS   R             L D +
Sbjct: 1942 IGYKNSLTNATMRQDVVVMENLFYDR-KIDETFDLKGSMRGRYVESSGVDND--VLLDEN 1998

Query: 422  FLKQGVR---IDIGEAAKEKLLETLTADVEFLTKLHLMDYSLLLGVHE 556
             L+  +R   I I   +K  L + +  D EFL +  +MDYSLL+G+ +
Sbjct: 1999 LLEM-IREHPIFIRPHSKAVLSKAIFKDTEFLAQHMVMDYSLLVGIDQ 2045


>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 24/68 (35%), Positives = 29/68 (42%)
 Frame = +2

Query: 350 GSTVDREASXXXXXXXXPTLKDNDFLKQGVRIDIGEAAKEKLLETLTADVEFLTKLHLMD 529
           GST  R AS        PTLKD DF+     +D  E                L    +MD
Sbjct: 163 GSTYKRRASKAERAKKHPTLKDLDFI-----VDFPEV---------------LESFKIMD 202

Query: 530 YSLLLGVH 553
           YS+LLG+H
Sbjct: 203 YSILLGIH 210


>SB_16820| Best HMM Match : BRF1 (HMM E-Value=0.2)
          Length = 304

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/51 (23%), Positives = 29/51 (56%)
 Frame = +1

Query: 202 IHRGEARQDPAPAVLGHVPTDRRRNRALPGRYQERVLQPSQYTQKVRFEGV 354
           I+  E +   A   L ++  DR+R R+ PG+  ++ L+  + ++K++ + +
Sbjct: 185 IYESEQQTKSAIERLRYIHRDRKRKRSSPGKALKKSLKKKRVSRKIQLDAI 235


>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
          Length = 1172

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 244  LGHVPTDRRRNRALPGRYQERVLQPSQYTQKVRFEGVDGGSRGLREGT 387
            +G+  TDRR + AL  + Q   L+ +Q   ++  +G DGG     +G+
Sbjct: 1050 VGNRRTDRRFSAALGKKIQLYRLEENQTENRINEDGPDGGQSDTGDGS 1097


>SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12)
          Length = 567

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
 Frame = +1

Query: 220 RQDPAPAVLGHVPTDRRRNRALPGRYQERVLQPSQY--TQKVRFEG 351
           R  P P   GH P  R    A+  RY+     P  Y  T   R+ G
Sbjct: 488 RHTPDPRYYGHTPAPRYNGHAIYPRYRGHTPDPRYYGHTPDPRYHG 533


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 90   DESSATPPATLSGIL-CSPNRRWRICPSCR 4
            ++ S TP    SG L C  N  W + P CR
Sbjct: 1595 EDGSETPGTRTSGTLRCPANAPWNLIPVCR 1624


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,459,195
Number of Sequences: 59808
Number of extensions: 326856
Number of successful extensions: 1154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)