Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0366
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.4  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    26   3.2  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    26   4.2  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   4.2  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   7.3  

>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 229 KPSSSFTSPNNMVTGGSIGSECVSFAVMKACNEL 330
           +PS+S +SP++  T  S G+  ++ + + A NE+
Sbjct: 70  QPSTSSSSPSSTSTSSSSGTSVITASDVSASNEI 103


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = +1

Query: 187 CAYALG-IKLEKISVKPSSSFTSPNNMVTGGSIGSECVSFAVMKACNELNKRLAPIKEKL 363
           CA   G I + KIS +PS   +SP + VT  S  S+ ++  V K   +  K  A    K+
Sbjct: 229 CASENGTIHVFKISKQPSDPNSSPTSSVTVSSSWSKYLTSNVAKVW-DTRKEFA--TAKI 285

Query: 364 SNPSWEELIVEANTAGINLQVAS 432
              S+   I+  +++G ++QVAS
Sbjct: 286 PEASFYGKII-FSSSGPHIQVAS 307


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 23/80 (28%), Positives = 33/80 (41%)
 Frame = +1

Query: 235 SSSFTSPNNMVTGGSIGSECVSFAVMKACNELNKRLAPIKEKLSNPSWEELIVEANTAGI 414
           +SSF +     T  +   E     +++ C  L   +  I  KL  P+   LI      G+
Sbjct: 608 TSSFYNEIERFTKSTGIEEITENGILQKCFHLLPFIKNIIVKLG-PNGALLISSEKLQGV 666

Query: 415 NLQVASAFSPVTDGVKPYDV 474
           N   AS F+P    VK Y V
Sbjct: 667 NSNSASLFTPGNVTVKYYPV 686


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -2

Query: 361 VSLLLALIFCLIHYTPS*LRMKRIRCQYCHRLPYCWVK 248
           +SL++ALI  +I+ T S   +K I C Y  ++ +C+ K
Sbjct: 277 ISLIMALISAIINKTASQNSIKIISCLY--QVGFCFFK 312


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +1

Query: 241 SFTSPNNMVTGGSIGSECVSFAVMKACNELNKRLAPIKEKLSNPSWEELIVEAN 402
           S   P N+  G + G+E     V  +     + + PIK K    S+E L    N
Sbjct: 539 SSVQPTNLPNGSTNGTETFIPPVQNSITSNKEAVKPIKNKPKPISFESLSAVGN 592


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,083
Number of Sequences: 5004
Number of extensions: 42665
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)