Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0366
(545 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9091| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=1) 91 5e-19
SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0) 82 3e-16
SB_23316| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_35253| Best HMM Match : Extensin_2 (HMM E-Value=0.078) 42 4e-04
SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7) 30 1.4
SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_25759| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
>SB_9091| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=1)
Length = 215
Score = 91.1 bits (216), Expect = 5e-19
Identities = 49/115 (42%), Positives = 67/115 (58%)
Frame = +1
Query: 199 LGIKLEKISVKPSSSFTSPNNMVTGGSIGSECVSFAVMKACNELNKRLAPIKEKLSNPSW 378
LGI +E IS+K +++ TS N+ VTGGS+ SE + M+AC LN+RLAP+KE + W
Sbjct: 3 LGIPIELISIKENTTQTSANSSVTGGSVASELCTKGTMQACQILNERLAPLKENMKGVPW 62
Query: 379 EELIVEANTAGINLQVASAFSPVTDGVKPYDVYAVGIIEVEVDILTGNHEVLRVD 543
+LI +A I L S +G Y Y V E EVDILTG +++R D
Sbjct: 63 PKLIKKAGQQKIELSALSMSKGEHNG--EYVGYGVACAEAEVDILTGERQIVRCD 115
>SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0)
Length = 817
Score = 81.8 bits (193), Expect = 3e-16
Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 10/145 (6%)
Frame = +1
Query: 139 GGIEMGQGINTKAAQVCAYALGIKLEKISVKPSSSFTSPNNMVTGGSIGSECVSFAVMKA 318
GG EMGQG++TK Q+ + L + KI + +S+ T PN+ T S ++ AV+ A
Sbjct: 535 GGTEMGQGLHTKIVQIASRVLDVPTSKIHLSETSTNTVPNSSPTAASASTDIYGMAVLNA 594
Query: 319 CNELNKRLAPIKEKLSNPSWEELIVEANTAGINLQVASAFSPV--------TDGVKPYDV 474
C ++ +R+ P K+ +W + ++ A + +L A F + T+ P+
Sbjct: 595 CEKIVRRIEPYKKANPKGTWNDWVMAAYSDRTSLS-ADGFYKIPDIGYNWDTNSGDPFRY 653
Query: 475 YAVGII--EVEVDILTGNHEVLRVD 543
++ G EVE+D LTG+H+VLR D
Sbjct: 654 FSFGAACSEVEIDCLTGDHQVLRTD 678
Score = 34.3 bits (75), Expect = 0.066
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Frame = +3
Query: 12 RQNRWRKR*INLLP----LSSNITCVGLFNCIISVYHGDGTVVITHG 140
RQNRW+KR I L P ++ ++ + ++ VY DG+V++THG
Sbjct: 490 RQNRWKKRGIALTPTMFGIAFSLLSMNQGGALVHVY-TDGSVLVTHG 535
>SB_23316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 57.6 bits (133), Expect = 6e-09
Identities = 27/75 (36%), Positives = 40/75 (53%)
Frame = +1
Query: 319 CNELNKRLAPIKEKLSNPSWEELIVEANTAGINLQVASAFSPVTDGVKPYDVYAVGIIEV 498
C LN RL PI++K +W+ELI ++ + G++L S F Y Y E
Sbjct: 2 CEALNNRLTPIRQKYKPKNWQELISKSYSDGVDLSAKSMFFDPEMYPIQYSSYGATCTEA 61
Query: 499 EVDILTGNHEVLRVD 543
E+D+LTG ++LR D
Sbjct: 62 ELDVLTGESQILRTD 76
>SB_35253| Best HMM Match : Extensin_2 (HMM E-Value=0.078)
Length = 585
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 18 NRWRKR*INLLPLSSNITCVG-LFNCIISVYHGDGTVVITHGWYRNG 155
NRWRKR + L P N+ FN ++++Y DGTV ITHG G
Sbjct: 2 NRWRKRGLALCPGKFNMEFRHPTFNVLVNIYKHDGTVTITHGGIEMG 48
>SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 253 PNNMVTGGSIGSECVSFAVMKACNELNKRLAPIKEKLSNPSWE 381
P N+ T S+ + M +ELN++LA K KLS E
Sbjct: 224 PENVFTSNSLARANLHLNTMGTIDELNRQLADFKAKLSKSETE 266
>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
Length = 1815
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +1
Query: 235 SSSFTSPNNMVTGGSIGSECVSFAVMKACNELNKRLAPIKEKLSNPSWEELIVEANTAGI 414
S SF+SP+ G ++ V A + + + P ++ +P+ E+ I++ T
Sbjct: 1021 SDSFSSPDK-------GERTLTETVSSAFSAMADFVRPGSKQEKSPASEDSILKGVTLPS 1073
Query: 415 NLQVASAFSPVTDGVKP 465
VASAF+ + D VKP
Sbjct: 1074 LTSVASAFTSMADRVKP 1090
>SB_44895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 154 PFLYHPWVITTVPSPW 107
P + HPW TTV PW
Sbjct: 200 PTVTHPWTTTTVTHPW 215
>SB_25759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 466 YDVYAVGIIEVEVDILTGNHEVLRVD 543
Y Y V + E E+D+LTG + R D
Sbjct: 38 YVSYGVALAEAEIDVLTGERLIKRCD 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,059,546
Number of Sequences: 59808
Number of extensions: 304406
Number of successful extensions: 676
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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