Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0365
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    27   1.3  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    27   1.3  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   1.8  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   3.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   3.1  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    26   4.1  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   5.4  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   7.1  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   9.4  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   9.4  

>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 229 PPMPRKPSELPNQEPRSMGNGNERA*QT*GPKQRRIFTRMCHGRFLALTFLP 384
           PP  +K   +   EP    NGNE++       +  +F+   HG    L+F P
Sbjct: 312 PPSLQKSITMVGVEPLYQSNGNEKS------SKYNVFSESAHGNHQVLSFSP 357


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 156 YTTALLQHLYQTPLF 200
           YT  LLQHLY TP F
Sbjct: 378 YTNLLLQHLYPTPSF 392


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +3

Query: 138 WKNRHSY-TTALLQHLYQTPL 197
           WK+R S  T +LLQ L+QTPL
Sbjct: 41  WKDRMSVKTNSLLQTLFQTPL 61


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 300 SLTDVRTQATTNIYPDVPW*ILGSNILTG 386
           SLT V  ++T  ++  VPW IL S    G
Sbjct: 347 SLTVVWKESTRTVFETVPWRILSSQATNG 375


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 360  ILGSNILTGDQFYNFLNHNFD 422
            ILG+ +L+ D F N  N+ FD
Sbjct: 1233 ILGNTVLSADVFENLQNYGFD 1253


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +2

Query: 86  GVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQSCP 262
           G  +PYL  G      + E+ A+++ STI +   +   W  T+  ++P+  + ++ + P
Sbjct: 427 GAASPYLPFGAGRHRCIGEQFAYMHLSTIISKFVHDYTW--TLIGKVPNVDYSSMVALP 483


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 196 SLALHHVL*DAPPMPRKPSEL 258
           S+AL H     PP P  PSEL
Sbjct: 331 SMALEHEYFTTPPYPANPSEL 351


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 152 FLYDSTITAPLSNPPLWPYTMYFRMP 229
           F  + TIT P +N PL   + YFR P
Sbjct: 208 FSIEKTITGPFNNSPL---STYFRRP 230


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 165 ALLQHLYQTPLFGLTPCTLGCPTDATETFRVAQPGATQYG 284
           AL   + +   FG    T G   D  +  R+AQ   TQYG
Sbjct: 615 ALAGRVSEEIFFGPEKITSGASDDFQKVTRMAQAYVTQYG 654


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 317 PHVCQARSLPFPILRGSWL 261
           P++C   S P PI+ G W+
Sbjct: 350 PYLCYQASFPAPIVIGLWM 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,149
Number of Sequences: 5004
Number of extensions: 47785
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)