Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0365
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0925 - 7771465-7772195,7772284-7772431,7773706-7774317           30   1.0  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    28   4.1  
05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546...    27   9.5  

>07_01_0925 - 7771465-7772195,7772284-7772431,7773706-7774317
          Length = 496

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 136 DGRTG--ILIRQHYYSTFIKPPSLALHHVL*DAPPMPRKPSELPNQEPRSMGNG 291
           DG T   +L R  Y +   KP + A  +     PP PR    LP ++P   G+G
Sbjct: 10  DGHTTEPVLGRGDYEAAHQKPSAAAAANAPSRPPPPPRVAKSLPREQPGGRGSG 63


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +1

Query: 190 PPSLALHHVL*DAPPMPRKPSELPNQ---EPRSMGNGNE 297
           PP L  H VL   PP P  PS LPN+    P + G GN+
Sbjct: 624 PPPLPNHSVLPPPPPPPPPPS-LPNRLVPPPPAPGIGNK 661


>05_06_0057 +
           25253497-25253589,25253722-25253799,25254583-25254621,
           25254724-25255263,25255352-25255450,25255614-25255691,
           25255961-25256146,25256240-25256365
          Length = 412

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 229 PPMPRKPSELPNQEP 273
           PP+P +P  LPNQ P
Sbjct: 264 PPLPNQPPPLPNQPP 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,620,766
Number of Sequences: 37544
Number of extensions: 342126
Number of successful extensions: 847
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)