Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0365
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               64   5e-11
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)       63   2e-10
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)                41   6e-04
SB_7303| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.003
SB_19215| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_18298| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)                    28   4.2  
SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)                     28   5.5  
SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16)                  27   7.3  
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_45853| Best HMM Match : VKG_Carbox (HMM E-Value=8.8e-25)            27   9.6  
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)                  27   9.6  

>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 64.5 bits (150), Expect = 5e-11
 Identities = 27/74 (36%), Positives = 47/74 (63%)
 Frame = +2

Query: 44   LLKNSLTVTDNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFR 223
            +LK    V +  V G RAP+L++GG+NQF ++ + +F++DS++    ++PPLWPYT+ + 
Sbjct: 1658 ILKEFGGVNEKDVRGFRAPFLQIGGDNQFKVLHDHSFMFDSSMPTWRTDPPLWPYTLDYS 1717

Query: 224  MPHRCHGNLQSCPT 265
                C   +  CP+
Sbjct: 1718 SAQDC--VIPPCPS 1729


>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
          Length = 893

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 25/67 (37%), Positives = 40/67 (59%)
 Frame = +2

Query: 65  VTDNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHG 244
           V    V G RAP+L++GG+N+F  + +  F Y++++    +NPPLWPYT+ +     C  
Sbjct: 695 VNAEDVKGFRAPFLQIGGDNEFKALHDNKFTYETSMPTQQNNPPLWPYTLEYASTQEC-- 752

Query: 245 NLQSCPT 265
            +  CPT
Sbjct: 753 VIPPCPT 759



 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 188 NPPLWPYTMYFRMPHRCHGNLQSCPT 265
           NPP WPY++ +     C   +  CPT
Sbjct: 784 NPPFWPYSLDYASTQEC--VILPCPT 807


>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = +2

Query: 44  LLKNSLTVTDNSVV-GVRAPYLRVGGNNQFTMMEEQAFLYD-STITAPLSNPPLWPYTMY 217
           +L +S+T   +S + G RAP+L +   +Q+  +    F YD S  T    NPP++PYT+ 
Sbjct: 199 VLASSVTGLPSSTIKGFRAPFLEIT-EHQYPGLYTNNFTYDLSWPTGRYYNPPMYPYTLD 257

Query: 218 FRMPHRCHGNLQSCPTRSH-AVW 283
           +R    C   +  CP  S+  +W
Sbjct: 258 YRSIQDC--PVGKCPVMSYPGLW 278


>SB_7303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 414 NFDRHYEQNRAPLGLYFHAAWLKNNPEFLEA 506
           NF  HY  N+AP GL+ H+AW   +   +EA
Sbjct: 5   NFQYHYHSNKAPFGLHAHSAWFSQSTGHMEA 35


>SB_19215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1096

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 147 RHSYTTALLQHLYQTPLFGLTPC-TLGCPTDATET 248
           RH YT AL++HL +    GL    +LGC T    T
Sbjct: 588 RHPYTIALVEHLLEKSAAGLPAVESLGCSTQPAGT 622


>SB_18298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 158 YDSTITAPLSNPPLWPYTMYFRMP 229
           +DS  T PLS+ P  PY+ +F  P
Sbjct: 66  FDSRFTTPLSSRPTSPYSSHFTSP 89


>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
          Length = 1860

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 254  SCPTRSHAVWEMVMNELDRREDPSNDEYLPGC 349
            SC T S+ + + ++N +DR   P +D YL  C
Sbjct: 1113 SCLTWSNLISQELLNSIDRTIKPCDDFYLYAC 1144


>SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)
          Length = 1444

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 167 TITAPLSNPPLWPYTMYFRMPHR-CHGNLQSCPTRSH 274
           T T P+  P LWPY +   +P    H     C + SH
Sbjct: 382 TTTVPVMEPVLWPYLLECVVPEPFTHAMTAVCKSLSH 418


>SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16)
          Length = 724

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
 Frame = -1

Query: 353 WHIRVN----IRRCLGPHVC----QARSLPFPILRGSW 264
           W  RV+    IR+  GPH+C        + F IL GSW
Sbjct: 607 WDTRVDAKHSIRKIFGPHICGDALDIHPMNFNILTGSW 644


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 62   TVTDNSVV-GVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTM 214
            TVT N+V     A Y+R+   +  + +  +A +Y   +T P ++PP  P T+
Sbjct: 1613 TVTKNTVFPSFIARYVRINPTSWESSICLRAEIYGCPVTPPTTDPPRPPVTV 1664


>SB_45853| Best HMM Match : VKG_Carbox (HMM E-Value=8.8e-25)
          Length = 854

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 113 GGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMP 229
           G N+Q  M     F Y    T PL   P WP  ++ RMP
Sbjct: 82  GMNSQ--MFHIGMFSYTMMATLPLFCSPSWPKKLFSRMP 118


>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
          Length = 841

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -2

Query: 337 IFVVAWVLTSVKLVHYHFPYC----VAPGWATLKVSVASVGHPKVHGV 206
           +FV  WVL++++ + Y+F  C    VA   + L + + S  +P V+ +
Sbjct: 462 LFVFCWVLSAIRSLCYYFGLCDLEKVAENVSRLLLFLNSAANPIVYSL 509


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,758,555
Number of Sequences: 59808
Number of extensions: 366088
Number of successful extensions: 843
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)