Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0365
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-11|AAM69114.1|  358|Caenorhabditis elegans Hypothetical p...    65   3e-11
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    65   3e-11
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    65   3e-11
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    60   7e-10
AF067608-11|AAC17656.2|  368|Caenorhabditis elegans Hypothetical...    31   0.39 
Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical pr...    30   0.91 
Z83216-13|CAL63987.1|  126|Caenorhabditis elegans Hypothetical p...    27   6.4  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U80029-12|AAB37591.1|  456|Caenorhabditis elegans Hypothetical p...    27   8.5  

>U28735-11|AAM69114.1|  358|Caenorhabditis elegans Hypothetical
           protein F48E3.8c protein.
          Length = 358

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
 Frame = +2

Query: 80  VVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQSC 259
           ++G RAP L++GG+ Q+ MM E  F +D+++   L + P WP T+  ++   C GN   C
Sbjct: 156 IIGTRAPELKIGGDAQYRMMSENNFTFDNSM---LVSSPYWPQTLDHKLAWECDGN---C 209

Query: 260 PTRSH-AVWEMVMNELDRRE 316
           PT+SH A+WE+ +  +   +
Sbjct: 210 PTQSHKAIWEIPIQNIQAND 229


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
 Frame = +2

Query: 80   VVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQSC 259
            ++G RAP L++GG+ Q+ MM E  F +D+++   L + P WP T+  ++   C GN   C
Sbjct: 2225 IIGTRAPELKIGGDAQYRMMSENNFTFDNSM---LVSSPYWPQTLDHKLAWECDGN---C 2278

Query: 260  PTRSH-AVWEMVMNELDRRE 316
            PT+SH A+WE+ +  +   +
Sbjct: 2279 PTQSHKAIWEIPIQNIQAND 2298


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
            F48E3.8b protein.
          Length = 1299

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
 Frame = +2

Query: 80   VVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYFRMPHRCHGNLQSC 259
            ++G RAP L++GG+ Q+ MM E  F +D+++   L + P WP T+  ++   C GN   C
Sbjct: 1097 IIGTRAPELKIGGDAQYRMMSENNFTFDNSM---LVSSPYWPQTLDHKLAWECDGN---C 1150

Query: 260  PTRSH-AVWEMVMNELDRRE 316
            PT+SH A+WE+ +  +   +
Sbjct: 1151 PTQSHKAIWEIPIQNIQAND 1170


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 60.5 bits (140), Expect = 7e-10
 Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
 Frame = +2

Query: 71   DNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITA--PLSNPPLWPYTMYFRMPHRCHG 244
            +  +VG+R+P L +GG+NQF MM    FL+D++++A   +   P WP TM +++   C  
Sbjct: 1626 EEEIVGIRSPQLALGGDNQFEMMIGAEFLWDNSMSANPGIHGEPFWPQTMDYQVAWDC-- 1683

Query: 245  NLQSCPTRSH-AVWEMVMNE 301
            N  SCP  S   VW + +N+
Sbjct: 1684 NEASCPKSSFPGVWSVPLNQ 1703



 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 381  TGDQFYNFLNHNFDRHYEQNRAPLGLYFHAAWLK 482
            T D+    +  NF+R Y  NRAP  L  +A +L+
Sbjct: 1730 TVDELEEIITRNFERSYSANRAPYVLSLNADFLQ 1763


>AF067608-11|AAC17656.2|  368|Caenorhabditis elegans Hypothetical
           protein B0511.11 protein.
          Length = 368

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 184 IKPPSLALHHVL*DAPPMPRKPSELPN 264
           I+PP++    VL D+P +P+ PSE PN
Sbjct: 56  IEPPAVLEQKVLPDSPEVPKAPSEPPN 82


>Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical
           protein C06C6.6 protein.
          Length = 834

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 227 PHRCHGNLQSCPTRSHAVWEMVMNELDRREDPSN-DEYLPGCAMV 358
           PH  H N+ +  ++ H+        +D  EDP+   E LPG A V
Sbjct: 52  PHDKHSNINNIDSQEHSSRRQFARAVDDNEDPNTLFEKLPGAARV 96


>Z83216-13|CAL63987.1|  126|Caenorhabditis elegans Hypothetical
           protein C08F11.17 protein.
          Length = 126

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 257 CPTRSHAVWEMVMNELDRREDPSNDEYLPGCAMVDSWL 370
           C   S+ V E   +      D SND YL GC +  SW+
Sbjct: 21  CSAPSNIVSETFSSAKQCFLDYSNDAYLYGCGVTASWV 58


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
 Frame = +3

Query: 174 QHLYQTPLFGLTPCTLGCPTDATETFRVAQPGATQYGKW**TSLTDVRTQATTNIYPDVP 353
           QH  Q PLFG  P  + CPT       +   G   +G+     LT  R     +     P
Sbjct: 340 QHFCQLPLFG--PSPICCPTPELTCNEMVSAGTPCFGR----GLTIQRFYFNPSTQKCQP 393

Query: 354 W*IL-----GSNILTGDQFYNFLNHNFD 422
           +        G+N  T DQ  NF  H+ D
Sbjct: 394 FHYYGCSGNGNNFETVDQCQNFCLHSAD 421


>U80029-12|AAB37591.1|  456|Caenorhabditis elegans Hypothetical
           protein T20D4.6 protein.
          Length = 456

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 56  SLTVTDNSVVGVRAPY-LRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMY 217
           SL +TD+S  G  APY L +  N     +   + + D     P + PP +  +MY
Sbjct: 366 SLPMTDDSEKGTDAPYPLGLYPNVNDVNLPYPSVVQDGNAVIPSAPPPSYQESMY 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,959,378
Number of Sequences: 27780
Number of extensions: 277526
Number of successful extensions: 688
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)