Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0364
         (633 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   1.6  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   2.8  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    23   2.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   2.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.6  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = -1

Query: 429 PQTTPGTNYHKQLPLWPQRVVSQIQLLSLLPNYRYFFHISQTTSLKYETVL-LR*YLSMF 253
           P TT     H + P   Q  V  +++       R   H+ Q    +Y  +  LR  L+  
Sbjct: 240 PITTCNKKQHLESPSALQAKVDPLKIPEA--EKRKLIHLLQ----EYRCIFSLRPGLTHK 293

Query: 252 ETH*MRLVTRSVHLLNPYPAPLLL 181
            TH ++L  ++  L  PYP P  L
Sbjct: 294 YTHEIKLHDKTPFLKRPYPVPFAL 317


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +1

Query: 382 PKGKLLMVIRSWSGLRIVLVILMEKSYRAHGRISRYF 492
           P G+    ++ W  LR+  +  ++   R H  ++ YF
Sbjct: 350 PLGRRFRALKLWFVLRLYGIENLQAFIRKHVELAHYF 386


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 45  LKAKKCTWSQCRRLHLLRNQAYVNGEWVKAKS 140
           ++AKK  WSQC  ++ L    Y+  + + A S
Sbjct: 117 IRAKK-RWSQCMYMYFLLGFRYLVNDELSAHS 147


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 45  LKAKKCTWSQCRRLHLLRNQAYVNGEWVKAKS 140
           ++AKK  WSQC  ++ L    Y+  + + A S
Sbjct: 431 IRAKK-RWSQCMYMYFLLGFRYLVNDELSAHS 461


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 108 YVNGEWV 128
           YVNGEWV
Sbjct: 90  YVNGEWV 96


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 102 DSSINANVCIDSMYIFWLSTRFPERK 25
           DS ++  + +D    FW    FP+ K
Sbjct: 387 DSGLDLFLSVDYAVKFWTKKGFPKSK 412


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,513
Number of Sequences: 336
Number of extensions: 3842
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)