Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0364
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 182 3e-47
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 157 9e-40
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 114 1e-26
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 99 6e-22
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 82 6e-17
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 64 2e-11
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 0.97
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 28 1.3
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 3.9
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 6.9
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch... 25 9.1
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 25 9.1
SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc... 25 9.1
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 182 bits (444), Expect = 3e-47
Identities = 82/177 (46%), Positives = 118/177 (66%)
Frame = +3
Query: 102 QAYVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKE 281
++Y+ G+WV A S F V NP + +A V DM ++ + A+ A AF +++++ KE
Sbjct: 25 RSYIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFLSYRNSDIKE 84
Query: 282 RSRILRRWFDLCEKNTDNLAEVITAESGKPLAEAKGEVAYGNSFLEWFADSARHINGEII 461
R ILRRW+DL +N D+LA ++T E+GK L +AKGEV Y F++WFA A I+G+
Sbjct: 85 RYAILRRWYDLIMENADDLATMMTLENGKALGDAKGEVVYAAKFIDWFAGEALRISGDSS 144
Query: 462 PSPWPNKQILLTRNPLGVVSVITPWNFPFAMITRKVGALMAGGCTCVIKPSEDTPLS 632
S P +I+ + P+GVV +ITPWNFP AMITRKVGA +A GCT VI+P+ +TP +
Sbjct: 145 MSSNPQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAALAAGCTVVIRPAAETPFT 201
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 157 bits (382), Expect = 9e-40
Identities = 69/176 (39%), Positives = 117/176 (66%), Gaps = 1/176 (0%)
Frame = +3
Query: 102 QAYVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKE 281
Q++V G+W+ + +N F V NPA ++ +V D+ ++ + A+ A+ AF+T+K+ T +
Sbjct: 19 QSFVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKNFTHVQ 78
Query: 282 RSRILRRWFDLCEKNTDNLAEVITAESGKPLAEAKGEVAYGNSFLEWFADSARHINGEII 461
RS++L RW +L +N D+L +++T E+GKPL++A+ EV + +L+W+A A G++
Sbjct: 79 RSQLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEVTTCSGYLKWYAAEAVRTFGDVA 138
Query: 462 PSPWPNKQILLT-RNPLGVVSVITPWNFPFAMITRKVGALMAGGCTCVIKPSEDTP 626
PS ++ L++ + P+GV ++ITPWNFP AMI RK GA +A GCT + P+ TP
Sbjct: 139 PSSLQSQNFLISIKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAIFLPAFRTP 194
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 114 bits (274), Expect = 1e-26
Identities = 63/176 (35%), Positives = 96/176 (54%), Gaps = 1/176 (0%)
Frame = +3
Query: 108 YVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKERS 287
Y+NGEW K+ + +P+ + V+A+V K+ A+ +A AF+TWK E+
Sbjct: 24 YINGEWHKSAET--WETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKTWKKVPGSEKG 81
Query: 288 RILRRWFDLCEKNTDNLAEVITAESGKPL-AEAKGEVAYGNSFLEWFADSARHINGEIIP 464
+L + +L EK+ D LA + +SGKPL + A+G+V + L + A A I G++IP
Sbjct: 82 ELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIYGQVIP 141
Query: 465 SPWPNKQILLTRNPLGVVSVITPWNFPFAMITRKVGALMAGGCTCVIKPSEDTPLS 632
+ P K R P+GV I PWN+P M K+ +A G +IK +E TPLS
Sbjct: 142 T-GPEKLAYAKRTPIGVCGQIVPWNYPLNMAGWKIAPALAAGNCIIIKSAETTPLS 196
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 98.7 bits (235), Expect = 6e-22
Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 4/179 (2%)
Frame = +3
Query: 108 YVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASNAFQT---WKDTTAK 278
++N + V + V++P+ + ++ EV D D +D A+ A AFQT W+ ++
Sbjct: 26 FINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSSA 85
Query: 279 ERSRILRRWFDLCEKNTDNLAEVITAESGKPLAEAKGEVAYGNSFLEWFADSARHINGEI 458
+R R L R D E+N + LA + T ++GK + A+G+V ++ A G+
Sbjct: 86 QRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDVQAAADCFRYYGGWADKDYGQT 145
Query: 459 IPSPWPNKQILLTRN-PLGVVSVITPWNFPFAMITRKVGALMAGGCTCVIKPSEDTPLS 632
I + K+ TR+ P+GV I PWNFPF M K+ +A G T ++K +E TPLS
Sbjct: 146 IETDI--KRFAYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTAELTPLS 202
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 82.2 bits (194), Expect = 6e-17
Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 6/184 (3%)
Frame = +3
Query: 99 NQAYVNGEWVKAKSNLVFAVH--NPADDSVVAEVPDMDSKDAQNALLTASNAFQT--WKD 266
N +++G++V + NPA + ++ + +KD +A+ A N F++ W
Sbjct: 21 NSLFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGIWAK 80
Query: 267 TTAKERSRILRRWFDLCEKNTDNLAEVITAESGKPLAEAKGEVAYGNSFLEWFADSARHI 446
K+R +LR+ + + + LA + T GKP A ++ E++A+ A
Sbjct: 81 WPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDIDSCADMFEYYAEVAETD 140
Query: 447 NGEI-IPSPW-PNKQILLTRNPLGVVSVITPWNFPFAMITRKVGALMAGGCTCVIKPSED 620
N + +P P P R P GV+ VITPWNFP M K+ +A G V+KPSE
Sbjct: 141 NPTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFPLKMALWKLVPAIASGNCVVLKPSEL 200
Query: 621 TPLS 632
P S
Sbjct: 201 APWS 204
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 63.7 bits (148), Expect = 2e-11
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 7/163 (4%)
Frame = +3
Query: 165 PADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKERSRILRRWFDLCEKNTDNLAE 344
P D S++ EV + D +++ A A + WK T+ ER L+ + +N D AE
Sbjct: 10 PGDGSLLGEVKLFNKSDIDQSIILAEEAQKEWKSTSFAERRNFLKALKENIIRNQDKYAE 69
Query: 345 VITAESGKPLAEAK-GEVAYGNSFLEWFADSARHINGEIIPSPWPNKQI------LLTRN 503
+ ++GK L +A GE+ + W + + P+ PN + +
Sbjct: 70 IACKDTGKTLVDAAFGEILVTLEKINWTLANGEQ---SLRPTKRPNSLLTSYKGGYVKYE 126
Query: 504 PLGVVSVITPWNFPFAMITRKVGALMAGGCTCVIKPSEDTPLS 632
PLGV++ + WN+P + + + G V+K SE T S
Sbjct: 127 PLGVIAALVSWNYPLHNALGPIISALFAGNAIVVKGSELTAWS 169
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.3 bits (60), Expect = 0.97
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 120 EWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASN 245
E + NL+ AVH AD E PD+D + Q L +N
Sbjct: 565 ELQQQNQNLLSAVHELADRMEKDEKPDLDGAEIQEETLIKAN 606
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 399 YGNSFLEWFADSARHINGEIIPSPWPNKQI 488
+G L FA +A+ +NG I+ +PW +++
Sbjct: 410 HGALILSEFAGAAQSLNGSIVINPWNTEEL 439
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 26.2 bits (55), Expect = 3.9
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -1
Query: 201 YPAPLLLHCRQLDYELQTPNYF--LP*PILRSHRLDSSINANVCIDSMYIFWL 49
Y P L CR ++ E L +LRS L S + A +C+DS + +L
Sbjct: 961 YRCPFL--CRNIEKERTVEQLVSRLQTKLLRSAELVSGLQAKLCLDSFKLLYL 1011
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 165 PADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKE 281
P DD V EV + K ++ + +NAF+ + D + E
Sbjct: 61 PEDDEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVE 99
>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 187
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 454 KSYRAHGRISRYFS 495
++YRAHGR++ Y S
Sbjct: 128 RTYRAHGRVTAYLS 141
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.0 bits (52), Expect = 9.1
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Frame = +3
Query: 174 DSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKERSRI----LRRW--FDL-CEK-NT 329
DS+ E P + S+ ++ ++ S K ER++I LR+ F L EK NT
Sbjct: 130 DSITDETPKVLSEIKEHGTISDSKTLTDLKKRKLVERNKIMYFSLRKGPNFSLQIEKLNT 189
Query: 330 DNLAEVITAES 362
D AE+IT+ S
Sbjct: 190 DLTAEMITSRS 200
>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +1
Query: 454 KSYRAHGRISRYFS 495
++YRAHGR++ Y S
Sbjct: 128 RTYRAHGRVTAYLS 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,435
Number of Sequences: 5004
Number of extensions: 62517
Number of successful extensions: 200
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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