Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0363
         (513 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    26   0.23 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   1.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   1.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   3.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.9  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   4.9  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   4.9  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 498 VQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLLHK**GT-HLQDSPFLSVNTLLL 322
           V++ S L    S+P LT ++P PV++   TST S           HL+DSP      L +
Sbjct: 137 VEKSSKLK-NKSAPILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSPNYIKPQLHV 195

Query: 321 SVGLT 307
           S G T
Sbjct: 196 STGST 200


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 229 PCLASEHLRNAPHAGEARHGEPGRHHR*AYGEQQRVYG*ERG 354
           P L ++ + N  H G     +  +HH+  + +Q  +YG ++G
Sbjct: 155 PPLTTQSMNNH-HMGHHMQEQHPQHHQPHHQQQHMMYGGQQG 195


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 229 PCLASEHLRNAPHAGEARHGEPGRHHR*AYGEQQRVYG*ERG 354
           P L ++ + N  H G     +  +HH+  + +Q  +YG ++G
Sbjct: 157 PPLTTQSMNNH-HMGHHMQEQHPQHHQPHHQQQHMMYGGQQG 197


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 464 EDCQESVEICCTNP 505
           +DC E V+ C TNP
Sbjct: 94  KDCGEYVDWCSTNP 107



 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 395 CSCYTNSRGRICKI 354
           CSC + + G IC+I
Sbjct: 246 CSCPSGTLGYICEI 259


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 241 SEHLRNAPHAGEARHGEPGRHH 306
           S HL +A H   A H  P  +H
Sbjct: 42  SPHLNHAMHPYHANHVNPTANH 63


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 353  ESCKCVPYYLCNK 391
            +   C  YYLCN+
Sbjct: 2245 DDTNCAQYYLCNQ 2257


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +3

Query: 330 ACLRIRTGNLANASPTIC 383
           +C+ +  G+  N++P+IC
Sbjct: 21  SCIAVGVGSGRNSAPSIC 38


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 486 STLSWQSSSPNLTSSTPHP 430
           S LS   ++PN +S++P+P
Sbjct: 56  SLLSPSGNTPNKSSTSPYP 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,488
Number of Sequences: 336
Number of extensions: 2479
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)