Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0363
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   3.8  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   6.7  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   8.8  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 483 TLSWQSSSPNLTSSTPHPVTLALLTST-PSLF 391
           T SW SSS  LT +    VT A+ T+  P +F
Sbjct: 175 TFSWDSSSMQLTLTEGMAVTTAVYTNAIPQIF 206


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
 Frame = -1

Query: 363 LQDSPFLSVNT-----LLLSVGLTMMSSRXXXXXXXXXXXXPKMFRSKAGSKVVSWARPT 199
           LQ  P LS NT     L+  + L   +SR                 +K  +++VS +   
Sbjct: 207 LQALPSLSKNTVNESSLVRKLNLEKSTSRELRIPTQTLEPKFTTNTAKYANELVSCSMLD 266

Query: 198 VTSTASKSERIALLLLKHSEKENIQN 121
            +ST SKS    + L  H    ++QN
Sbjct: 267 SSSTLSKSVNSKINLKSHQSSSSVQN 292


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 183 SKSERIALLLLKHSEKENIQNFTSLYYENLRP 88
           +K  RI + +   S  E I  F   +Y N+RP
Sbjct: 430 TKDTRIMIFVEIRSSAEEILRFLGKFYPNVRP 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,256
Number of Sequences: 5004
Number of extensions: 38967
Number of successful extensions: 203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)