Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0363
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0017 + 12297539-12297697,12298191-12298229,12298457-122988...    32   0.31 
02_04_0054 + 19279579-19280772                                         32   0.31 
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511...    30   1.3  

>11_04_0017 +
           12297539-12297697,12298191-12298229,12298457-12298825,
           12298921-12299058
          Length = 234

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 295 QVPRAGLRRRGGRSEDVQKQGRV*GRVLGETDCYQHRQQKR 173
           +VP A ++  GGR  D +  GR+ G   G   C   RQ K+
Sbjct: 2   EVPAASVKGGGGRRSDEEAPGRIAGNGAGNVACLFTRQGKK 42


>02_04_0054 + 19279579-19280772
          Length = 397

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 430 RHAGVINVHPFIVLVTQIVGDAFARFPVLIRKHAVALRRLNDDVFQVPRAGL--RRRGGR 257
           RH G+  +   +   T ++ +A+    +L+ KHA  L  + ++   V RA L  RRR  R
Sbjct: 316 RHPGIFYLSRVLGTQTVVLREAYGGGSLLLAKHAHPLATIREEYSAVMRAALPPRRRRSR 375

Query: 256 SED 248
             D
Sbjct: 376 ESD 378


>01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,
            5111390-5111668,5111886-5112257,5112371-5112475,
            5112832-5112909,5112990-5113199,5113287-5113406,
            5113508-5113606,5113685-5113750,5113914-5114141,
            5114216-5114521,5115324-5115381
          Length = 1066

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -1

Query: 249  MFRSKAGSKVVSWARPTVTSTASKSERIALLLLKHSEKENIQNFTSLYYENLRP*LAH 76
            M R      +VSWARP +T+  S  + +  LL  +   +N+    ++    ++P +AH
Sbjct: 892  MSRPGGQENLVSWARPLLTNVVSLRQAVDPLLGPNVPLDNVAKAAAIASMCVQPEVAH 949


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,688,594
Number of Sequences: 37544
Number of extensions: 274451
Number of successful extensions: 711
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)