Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0363
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_45726| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_25921| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)                       27   9.1  
SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   9.1  
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -3

Query: 457  EPDIQHSPPRHAGVINVHP-FIVLVTQIVGDAFARFPVLIRKHAVALRRLNDDVFQVPR- 284
            +PD+  +P  H G++   P ++ L+  ++   FA     +R  A A R L     + P+ 
Sbjct: 1309 DPDLDPNPSMHLGLMYTLPMYVALLGAVIVLYFAVLTCRVRSKAKAKRSLPVTKAKSPKL 1368

Query: 283  AGLRRR 266
            +G+++R
Sbjct: 1369 SGIQKR 1374


>SB_45726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 231 GSKVVSWARPTVTSTASKSERIALLLLKH-SEKENIQNFT 115
           G+K +SW +   T  A K  ++AL  L H   K+ ++N T
Sbjct: 67  GTKSLSWEQYQQTKAAPKPTKMALAFLDHIYTKDQLKNST 106


>SB_25921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -3

Query: 55 LRKIRIIFF-LVPNSCSPG 2
          +R IRI+F  L+ NSCSPG
Sbjct: 27 VRDIRILFLDLISNSCSPG 45


>SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1050

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +2

Query: 350 GESCKCVPYYLCNKNNEGVDVNNASVTGWGV--LDVRFGEEDCQESVEICCTN 502
           G  CKC P Y+ + N     V  +S+    +   D   G  DC  + +  CTN
Sbjct: 439 GYKCKCRPGYISSNNGRICTVVTSSMNPLDINECDPILGSNDCGANTD--CTN 489


>SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 868

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +2

Query: 350 GESCKCVPYYLCNKNNEGVDVNNASVTGWGV--LDVRFGEEDCQESVEICCTN 502
           G  CKC P Y+ + N     V  +S+    +   D   G  DC  + +  CTN
Sbjct: 265 GYKCKCRPGYISSNNGRICTVVTSSMNPLDINECDPILGSNDCGANTD--CTN 315


>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 231 GSKVVSWARPTVTSTASKSERIALLLLKH-SEKENIQNFT 115
           G+K +SW +   T  A K  ++AL  L H   K+ ++N T
Sbjct: 134 GTKSLSWKQYQQTKAAPKPTKMALAFLDHIYTKDQLKNST 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,863,392
Number of Sequences: 59808
Number of extensions: 326029
Number of successful extensions: 1195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)