Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0363
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81528-8|CAB04288.2|  643|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AC024817-39|AAP68916.1|  128|Caenorhabditis elegans Hypothetical...    27   7.9  

>Z81528-8|CAB04288.2|  643|Caenorhabditis elegans Hypothetical
           protein F35E2.9 protein.
          Length = 643

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 498 VQQISTLSWQSSSPNLTSSTPHPVTLALLT 409
           +   +TLS+ S+ P++TSST  P  L  +T
Sbjct: 559 ISNSTTLSFNSTQPSITSSTSPPKPLKNIT 588


>AC024817-39|AAP68916.1|  128|Caenorhabditis elegans Hypothetical
           protein Y54G2A.36 protein.
          Length = 128

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 302 CLPGSPCRASPAWGAFRRCSEARQ 231
           C+ G PC+   A G F RC    Q
Sbjct: 53  CVDGWPCQEDSACGGFNRCLHQEQ 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,476,401
Number of Sequences: 27780
Number of extensions: 234550
Number of successful extensions: 675
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)