Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0363
         (513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger) fa...    31   0.34 
At4g11440.1 68417.m01842 mitochondrial substrate carrier family ...    28   3.2  
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea...    28   4.2  
At1g70580.2 68414.m08128 glutamate:glyoxylate aminotransferase 2...    27   7.4  
At1g70580.1 68414.m08127 glutamate:glyoxylate aminotransferase 2...    27   7.4  
At3g13400.1 68416.m01685 multi-copper oxidase type I family prot...    27   9.8  
At1g25410.1 68414.m03154 adenylate isopentenyltransferase 6 / ad...    27   9.8  

>At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 145

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 356 SCKCVPYYLCNKNNEGVDVNNASVTGWGVLDVRFGEEDCQESVEICC 496
           +C C+P     KN    D ++    G+ ++ V FG+++ +E  EICC
Sbjct: 20  TCVCIPLGRLKKNGGDADAHDDD--GYNLVGVMFGDKEKEE--EICC 62


>At4g11440.1 68417.m01842 mitochondrial substrate carrier family
           protein 
          Length = 550

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 290 NLEDIIVKPTESNSVFTDKNGESCKCV 370
           N E  I+ P  S      +NG+ C CV
Sbjct: 184 NFEGCILNPVSSKEELASRNGDGCDCV 210


>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
           family protein contains similarity to regulatory protein
           Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
           (6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
          Length = 781

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 495 QQISTLSWQSSSPNLTSSTPHPVTLALLTST 403
           + +++LSWQ+S P + +   +   +ALL ST
Sbjct: 310 EDVTSLSWQTSKPVIVNEKNYTSEMALLGST 340


>At1g70580.2 68414.m08128 glutamate:glyoxylate aminotransferase 2
           (GGT2) identical to glutamate:glyoxylate
           aminotransferase 2 [Arabidopsis thaliana] GI:24461829;
           similar to alanine aminotransferase from Panicum
           miliaceum [SP|P34106], GI:4730884 from Oryza sativa;
           contains Pfam profile PF00155: aminotransferase, classes
           I and II
          Length = 481

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 368 VPYYLCNKNNEGVDVNN 418
           VPYYL    N G+DVNN
Sbjct: 180 VPYYLEESENWGLDVNN 196


>At1g70580.1 68414.m08127 glutamate:glyoxylate aminotransferase 2
           (GGT2) identical to glutamate:glyoxylate
           aminotransferase 2 [Arabidopsis thaliana] GI:24461829;
           similar to alanine aminotransferase from Panicum
           miliaceum [SP|P34106], GI:4730884 from Oryza sativa;
           contains Pfam profile PF00155: aminotransferase, classes
           I and II
          Length = 481

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 368 VPYYLCNKNNEGVDVNN 418
           VPYYL    N G+DVNN
Sbjct: 180 VPYYLEESENWGLDVNN 196


>At3g13400.1 68416.m01685 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 551

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 507 MGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 385
           +G+ QQ+  ++ Q   PNL S++ + V + +  +    FLL
Sbjct: 41  LGIPQQVILINGQFPGPNLNSTSNNNVVINVFNNLDEPFLL 81


>At1g25410.1 68414.m03154 adenylate isopentenyltransferase 6 /
           adenylate dimethylallyltransferase / cytokinin synthase
           (IPT6) identical to adenylate isopentenyltransferase
           (IPT6) [Arabidopsis thaliana] GI:14279064
          Length = 342

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = -3

Query: 502 ISAADLHALLAVFFAEPDIQHSPPRHAGVINVHPFIVLVTQIVGDAFARFPVLIRKHAVA 323
           +S + L   +   F  P +  +   HAG  N+   +VL+T   G   +R  V +      
Sbjct: 12  LSHSSLLPTVTTKFGSPRLVTTCMGHAGRKNIKDKVVLITGTTGTGKSRLSVDLATRFFP 71

Query: 322 LRRLNDDVFQV 290
              +N D  Q+
Sbjct: 72  AEIINSDKMQI 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,777,176
Number of Sequences: 28952
Number of extensions: 211781
Number of successful extensions: 526
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)