Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0362
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    27   1.8  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.8  

>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 129 KGAVKEISLIITALEHFYNTLHYTPFHNKELSL 31
           K +  ++ L++ A++ FYN    TP   + L+L
Sbjct: 231 KLSANDVQLLVLAIQKFYNASENTPLGKERLAL 263


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 375 NKHIDEKNSFLLCKFVNTGSVAMYGH 298
           ++++D  NSFL    +N  S A+Y +
Sbjct: 327 HRYVDGANSFLKLSSLNDSSTALYSY 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,084
Number of Sequences: 5004
Number of extensions: 30649
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)