Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0361
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 42 6e-05
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 29 0.56
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo... 27 1.3
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 1.7
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 1.7
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.3
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 3.0
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 4.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 6.9
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc... 25 6.9
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 25 9.1
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 41.9 bits (94), Expect = 6e-05
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +3
Query: 318 LEEDAYVEGIAKIIQRDFFPDLEKLNAQ 401
LEED Y+EG++ IIQ+ +FPDL KL A+
Sbjct: 30 LEEDDYIEGLSYIIQQQYFPDLPKLKAE 57
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 28.7 bits (61), Expect = 0.56
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 339 EGIAKIIQRDFFPDLEKLNAQNEYLEATENKDYQRLREL 455
E I K+I++ PDLE + +EYL E K ++REL
Sbjct: 355 EHITKLIEQQIKPDLESMLIISEYL--NEYKPSPKMREL 391
>SPCC1795.03 |gms1||UDP-galactose transporter
Gms1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 194 QLTFFIMFVACLIMCVYKNYLNKLQKDIFRAFNALI 87
QL+FF +F CL + K+Y N + F +N+++
Sbjct: 221 QLSFFSLF-PCLFTILMKDYHNIAENGFFFGYNSIV 255
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 318 LEEDAYVEG-IAKIIQRDFFPDLEKLNAQNEYLEATENKDYQRLRELTQKYS 470
LEE+A + + K+ + DLE LN N +EA +++ ++E TQ+ S
Sbjct: 411 LEENALLSHKVLKLTEE--IQDLETLNQLNTEIEARQSEKLNEVQEETQRLS 460
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 375 PDLEKLNAQNEYLEATENKDYQRLRELTQKYSGNRPPTEPYN 500
P LEK N +N+ E EN+ + E T++ N P EP N
Sbjct: 2192 PALEKYNLENQKKEILENESKE---EETRQPEVNIQPEEPIN 2230
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 497 IWFCRWSVPAILLS*FSKSLIVFVFC 420
IWFC WS+ + S ++KS+I+F C
Sbjct: 120 IWFCIWSLIS-GFSYYAKSVIMFDVC 144
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 227 CCLSRPHSASSQLTFFIMFVACLIMCVYKNYLNKLQKDI 111
CC +S ++ I+ ACL C KNY N+ +
Sbjct: 789 CCNVLKEDITSIFSWEILGDACLSFCQLKNYHNRFPNSL 827
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 59 LKRKSRWWNLLGH*KP*KYPSVVYLNNFYKR 151
L R ++ LL + KP YP + YL+N KR
Sbjct: 1115 LARLAKNTTLLSYSKPLSYPPIRYLDNATKR 1145
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 326 RCLCGGHSKNYSKRFLP*P 382
+C CG HSK Y LP P
Sbjct: 372 KCYCGLHSKTYPCSSLPSP 390
>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 167
Score = 25.0 bits (52), Expect = 6.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 35 TTTQKLKILKRKSRWWNL 88
T TQ++K L +K WW+L
Sbjct: 49 TITQRVKELTKKYGWWSL 66
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +3
Query: 378 DLEKLNAQNEYLEATENK-DY 437
D ++LN ++E LEA +NK DY
Sbjct: 101 DAQELNGEHEILEAMKNKADY 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,694
Number of Sequences: 5004
Number of extensions: 40051
Number of successful extensions: 107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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