Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0361
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0178 + 17594062-17595576                                         48   3e-06
02_04_0211 + 20957553-20957828,20957944-20958258,20962094-209628...    27   7.0  
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604...    27   9.2  

>06_03_0178 + 17594062-17595576
          Length = 504

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 24/69 (34%), Positives = 37/69 (53%)
 Frame = +3

Query: 318 LEEDAYVEGIAKIIQRDFFPDLEKLNAQNEYLEATENKDYQRLRELTQKYSGNRPPTEPY 497
           L+ED YV  + +II+RDFFPDL +L  + ++L+A  ++D   LR+   K    R   +  
Sbjct: 58  LDEDTYVAAVERIIERDFFPDLPRLRDRLDWLQALRSRDPLVLRDAQLKILERRRRAQRQ 117

Query: 498 NNPATFDTP 524
                  TP
Sbjct: 118 RQGGPVPTP 126


>02_04_0211 +
           20957553-20957828,20957944-20958258,20962094-20962801,
           20963362-20963609,20963758-20964101,20964200-20964236,
           20964270-20964575,20965281-20965347,20965498-20965626
          Length = 809

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 239 EAVES*DYCVQSTKNTQTE-VREEEQGFRGRCLCGGHS 349
           EA+E    C +S +N     + E    FRGRC+ G  S
Sbjct: 193 EAMEGMRKCARSFRNAPLRFIAEHHAVFRGRCVVGNRS 230


>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
            22061666-22061867,22062273-22062344,22062509-22062573,
            22062682-22062741,22063033-22064379,22064463-22064607,
            22064688-22067442,22068540-22068630,22068655-22068873
          Length = 2105

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
 Frame = +2

Query: 161  NKQQTL*RMSAGRKRYEAWRGSITEHEAVES*DYCVQSTKNTQTEVREEEQGFRGRCLCG 340
            N++ T  R+   + + E  RG   E EA    D   +  +  QT+   EE+  R R    
Sbjct: 1641 NEKITFKRLLLNKCQEEFERGEREEAEA----DKTEEEGEIKQTKEEREEKRIRARRRML 1696

Query: 341  GH----SKNYSKRFLP*PRETECTERILGGYR 424
            G+     + Y KR L      EC +++LG Y+
Sbjct: 1697 GNIRLIGELYKKRMLTERIMHECIKKLLGNYQ 1728


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,234,471
Number of Sequences: 37544
Number of extensions: 233732
Number of successful extensions: 461
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)