Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0361
         (524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2341| Best HMM Match : No HMM Matches (HMM E-Value=.)               74   8e-14
SB_47181| Best HMM Match : Pkinase (HMM E-Value=7.7e-31)               31   0.77 
SB_34304| Best HMM Match : HR1 (HMM E-Value=3.2)                       31   0.77 
SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)             28   5.4  
SB_42928| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_2341| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 731

 Score = 73.7 bits (173), Expect = 8e-14
 Identities = 34/60 (56%), Positives = 43/60 (71%)
 Frame = +3

Query: 345 IAKIIQRDFFPDLEKLNAQNEYLEATENKDYQRLRELTQKYSGNRPPTEPYNNPATFDTP 524
           + KIIQRDFFP+L KL AQ+EYL+A E  D +RLRE++ +Y  N+ P      PATFDTP
Sbjct: 251 VDKIIQRDFFPELSKLRAQHEYLDAVEQNDTERLREISSRYQSNQTP--HLATPATFDTP 308


>SB_47181| Best HMM Match : Pkinase (HMM E-Value=7.7e-31)
          Length = 801

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 221 GSITEHEAVES*-DYCVQSTKNTQTEVREEEQGFRGRCL-CGGHSKNYSKRFLP 376
           GS  EHE  E+  D   Q+ KN +TE++EEE    G  + C    K   K+  P
Sbjct: 154 GSPVEHEVAENVEDDSSQTKKNNETELQEEEPPSVGDAMECKDKEKKGRKKLQP 207


>SB_34304| Best HMM Match : HR1 (HMM E-Value=3.2)
          Length = 245

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 435 YQRLRELTQKYSGNRPPTEPYNNPATFDTP 524
           YQR+++L Q  SGN  P++P N    +D P
Sbjct: 77  YQRIQDLEQA-SGNEDPSKPLNTQIIYDLP 105


>SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 403 TNTWRLQKTKTIRDFEN*LKSIAGTDHLQNHITT 504
           T TW L KT+TI  FEN  +++  T  L  + +T
Sbjct: 111 TKTWSLSKTETITSFENWKQNLMYTLSLDTNFST 144


>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +3

Query: 345 IAKIIQRDFFPDLEKLNAQNEYLEATENKDYQRLRELTQKYSGNRPPTEPYNNP 506
           I K +QR  FP   K+    E     E KDY R        SG R    PY +P
Sbjct: 790 IVKYVQRQSFPRKMKILEVEERKRTEEEKDYSR-------SSGRRLNRAPYTSP 836


>SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 339 EGIAKIIQRDFFPDLEKLNAQNEYLEATENKDYQRLRELTQKYSGNRPPTEP 494
           E  A ++++   P  EKL+  N    AT+  DY+ + E     +GN+PPTEP
Sbjct: 285 EAKAALLRQHIRPTGEKLSLNNT--SATD--DYEPVAEPAP--NGNQPPTEP 330


>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
          Length = 1725

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 366  DFFPDLEKLNAQNEYLEATENKDYQRLRELTQKYSGNRPPTEPY 497
            D  PD++ +   N Y +AT     Q  + ++++ + NR P EP+
Sbjct: 1052 DISPDVKSMFDTNNYPKATCLVSRQMSQAVSERINTNRIPREPF 1095


>SB_42928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 357 IQRDFFPDLEKLNAQNEYLEATENKDYQRLREL 455
           +  DFF +  K N +  YLE  + K+ ++ R L
Sbjct: 14  MSHDFFDEYYKKNTKRRYLELCKKKNIEKKRPL 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,437,142
Number of Sequences: 59808
Number of extensions: 278687
Number of successful extensions: 743
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)