Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0361
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07790.1 68416.m00951 DGCR14-related similar to DGCR14 protei...    52   2e-07
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains...    28   3.3  
At4g01880.1 68417.m00246 expressed protein contains Pfam PF05206...    27   7.7  
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co...    27   7.7  
At3g09370.1 68416.m01111 myb family transcription factor (MYB3R3...    27   7.7  

>At3g07790.1 68416.m00951 DGCR14-related similar to DGCR14 protein
           (DiGeorge syndrome critical region 14) (ES2 protein)
           (Swiss-Prot:Q96DF8) [Homo sapiens]
          Length = 508

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 22/49 (44%), Positives = 36/49 (73%)
 Frame = +3

Query: 318 LEEDAYVEGIAKIIQRDFFPDLEKLNAQNEYLEATENKDYQRLRELTQK 464
           L+EDAYVE I KII+RD+FPD+ KL  + ++++A + +D  ++R+   K
Sbjct: 48  LDEDAYVEAIEKIIERDYFPDITKLRDRLDWIQAVKTRDPIQIRDAQLK 96


>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 726

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 414 EATENKDYQRLRELTQKYSGN 476
           E TEN D+Q L ++T  YSG+
Sbjct: 599 EKTENLDFQELAQMTDGYSGS 619


>At4g01880.1 68417.m00246 expressed protein contains Pfam PF05206:
           Protein of unknown function (DUF715)
          Length = 453

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 227 CCLSRPHSASSQLTFFIMFVACLIMCVYKNYLNK 126
           CCLSR    S  L    +   C  +  +K+Y+NK
Sbjct: 294 CCLSRQDGESPVLRGLAIATCCHHLSQWKSYINK 327


>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
           non-consensus acceptor splice site AT at exon 2; similar
           to DEAD box helicase protein GB:NP_006764 from [Homo
           sapiens], contains Pfam profile: PF00270  DEAD/DEAH box
           helicase
          Length = 568

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 167 ACLIMCVYKNY-LNKLQKDIFRAF 99
           + L  CV K+Y LNKL KD +RA+
Sbjct: 472 SALEKCVAKDYNLNKLAKDAYRAY 495


>At3g09370.1 68416.m01111 myb family transcription factor (MYB3R3)
           contains Pfam profile: Myb DNA-binding proteins;
           identical to cDNA putative c-myb-like transcription
           factor (MYB3R3) GI:15375285
          Length = 505

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 396 AQNEY-LEATENKDYQRLREL-TQKYSGNRPPTEPYNNPATFDTP 524
           A N Y L  T   DY R  E+ TQ+  GN     P  +P +F TP
Sbjct: 330 ANNGYHLYYTPQIDYYRASEVDTQRMYGNECGCSPSASPVSFFTP 374


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,945,008
Number of Sequences: 28952
Number of extensions: 201561
Number of successful extensions: 494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)