Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0360
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    29   0.47 
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    25   7.6  

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = -1

Query: 348 SIEY*ALLFSKMIKKTCM---KKILN*VPSETENIYITFDSYLHQSPFNVSSVHVAVVIM 178
           S+ Y AL  S ++ +  +    K+LN +P+     Y  F  YL+ SPFNV   H A+ I 
Sbjct: 175 SLRYPALSISFIVAQLILFPLGKLLNLLPNWKIG-YGRFSFYLNSSPFNVKE-HAAITI- 231

Query: 177 WNA*KLESKNGRVSNICALIT 115
             A  L S     +NI +  T
Sbjct: 232 --AVSLTSSTAYATNILSAQT 250


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 495 IYITMKFFGTK*LLIVE-SRNVLQ*TLLVIVFHHHH 391
           I+ T++ FG+  L+ +  +R +   T+L+ VFH HH
Sbjct: 252 IFFTLEKFGSITLVTITLTRKIF--TMLLSVFHFHH 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,549
Number of Sequences: 5004
Number of extensions: 31371
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)