Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0360
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)             25   1.3  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            24   4.2  
SB_56019| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_677| Best HMM Match : p450 (HMM E-Value=0)                          27   7.9  
SB_2762| Best HMM Match : p450 (HMM E-Value=0)                         27   7.9  

>SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)
          Length = 134

 Score = 24.6 bits (51), Expect(2) = 1.3
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 417 LVIVFHHHHP 388
           ++I+ HHHHP
Sbjct: 81  IIIIIHHHHP 90



 Score = 24.2 bits (50), Expect(2) = 1.3
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = -1

Query: 459 LLIVESRNVLQ*TLLVIVFHHHH 391
           ++I+   +    ++++I+ HHHH
Sbjct: 51  IIIIHHHHPSSSSIIIIIIHHHH 73


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 24.2 bits (50), Expect(2) = 4.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 417 LVIVFHHHHP 388
           ++I+ HHHHP
Sbjct: 291 IIIIHHHHHP 300



 Score = 22.6 bits (46), Expect(2) = 4.2
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -1

Query: 420 LLVIVFHHHH 391
           +++I+ HHHH
Sbjct: 243 IIIIIIHHHH 252


>SB_56019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 431 KTFLDSTINSYFVPKNFIVI 490
           K   D+TIN YF+PK+  VI
Sbjct: 372 KATCDTTINGYFIPKDTTVI 391


>SB_677| Best HMM Match : p450 (HMM E-Value=0)
          Length = 493

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 431 KTFLDSTINSYFVPKNFIVI 490
           K   D+TIN YF+PK+  VI
Sbjct: 372 KATCDTTINGYFIPKDTTVI 391


>SB_2762| Best HMM Match : p450 (HMM E-Value=0)
          Length = 493

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 431 KTFLDSTINSYFVPKNFIVI 490
           K   D+TIN YF+PK+  VI
Sbjct: 372 KATCDTTINGYFIPKDTTVI 391


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,214,240
Number of Sequences: 59808
Number of extensions: 220271
Number of successful extensions: 384
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)