Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0360
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   1.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   3.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   8.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 316 NDQKNLYEKNIELG 275
           ND+K+L+E  +E+G
Sbjct: 160 NDEKSLFENGVEIG 173


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 281 FNIFFIQVFLIILENNRAQYSMDSIKRDLRPAVGCY 388
           + +FFIQ+ LII+      Y  ++    L+   G Y
Sbjct: 11  YQLFFIQIVLIIVMGALMTYGPEANVNLLKNRTGRY 46


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +2

Query: 281 FNIFFIQVFLIILENNRAQYSMDSIKRDL 367
           FNI+++ ++  I+   +A YS+   K ++
Sbjct: 3   FNIWWLILYFSIVCQAKAHYSLRDFKANI 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,734
Number of Sequences: 438
Number of extensions: 2102
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)