Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0360
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04860.1 68415.m00501 pentatricopeptide (PPR) repeat-containi...    24   5.6  
At1g20760.1 68414.m02600 calcium-binding EF hand family protein ...    27   8.6  

>At2g04860.1 68415.m00501 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 582

 Score = 23.8 bits (49), Expect(2) = 5.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 235 ISTSVSI*CKFCSCGCRDHVERL 167
           IS   S+ C +  CGC    ERL
Sbjct: 171 ISVVTSLVCAYSRCGCLVSAERL 193



 Score = 22.2 bits (45), Expect(2) = 5.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 307 KNLYEKNIELGTV 269
           KN++EKN+E+  V
Sbjct: 131 KNMFEKNVEISPV 143


>At1g20760.1 68414.m02600 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 1019

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 333 LNIQWTALREIFVQPWAVTDDDDGT-LSLKAFIV 431
           L + W   RE+    W ++D D+ T LSL+ F +
Sbjct: 386 LFLSWRLPREVLKHVWELSDQDNDTMLSLREFCI 419


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,234,637
Number of Sequences: 28952
Number of extensions: 150119
Number of successful extensions: 246
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)