Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0359
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...    99   1e-21
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    31   0.75 
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    30   1.3  
08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931     27   9.2  
01_01_0205 + 1764034-1767601,1767934-1767944                           27   9.2  

>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score =   99 bits (238), Expect = 1e-21
 Identities = 48/130 (36%), Positives = 81/130 (62%)
 Frame = +1

Query: 67  MEAPLKSRVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAE 246
           ME P + R++  L       G E+  ++PGRVS E+DARL++D    I +  + + L+++
Sbjct: 127 MEKP-EDRMSCFLTKALANVGAEMAHLVPGRVSTEIDARLAYDTQGIIQRVHELLKLYSD 185

Query: 247 HGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLY*AIACAEANVTLISPFVG 426
           H +  ER+L K+ +TW+GI+A++ LE + GI  +LT ++S   A A A+A  +++  FVG
Sbjct: 186 HDVLSERLLFKIPATWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQAGASVVQIFVG 244

Query: 427 RILDWYVEHT 456
           R+ DW   H+
Sbjct: 245 RVRDWARTHS 254



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +2

Query: 488 GVVSVTKIYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISP 622
           G+    K+Y Y  K GYKT++M A+ RN  ++  L G D + I+P
Sbjct: 270 GLALAKKVYAYIHKNGYKTKLMAAAIRNKQDVFSLLGIDYI-IAP 313


>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
            14072261-14072404,14072528-14072761,14072836-14073981,
            14074863-14074922,14075178-14075420,14075509-14075607,
            14076196-14076367,14076597-14076735,14077514-14077624,
            14077695-14077797,14077885-14077962,14078054-14078122,
            14078203-14078275,14078891-14078975,14079473-14079536,
            14079963-14080073,14080139-14080213,14080306-14080398,
            14080982-14081056,14081172-14081261
          Length = 1259

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 239  NKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHP 126
            N +++++AF  +A  S+ N+ STS     G + +I+ P
Sbjct: 897  NSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASP 934


>12_02_0228 + 15903452-15903812,15904153-15904202,15904615-15904713,
            15907146-15907415,15908045-15908125,15909033-15909599,
            15909677-15910053,15910326-15911613
          Length = 1030

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 10/158 (6%)
 Frame = -1

Query: 494  LLPGSSLPS*VFFVCSTYQSNIRPTNGDISVTF---ASAQAIA*YKENNSVRLQWIPCFF 324
            L  GSS PS + F  +T QS+   T+G +   F   +S+++    ++ +       P  F
Sbjct: 727  LAGGSSSPSSMIFAGATSQSSSITTSGSVPFQFSSQSSSESSLAGQDKSKAASSSAPFSF 786

Query: 323  SNSLAA*IP--SQVEANLIKILSFLIPCSANKLINLIAFAMLASLSNDNLAST---STDT 159
            S    +  P   Q ++N +   S L+  S ++  N  + +   S SN NL S+   +  +
Sbjct: 787  SPQFGSTSPFAGQGKSNSVSSQSTLL--SGSQFSN--SLSAQTSTSNSNLLSSEKVNPGS 842

Query: 158  RPGIIFNISHPKST--LSISKVSATLLFNGASIILSIF 51
             P   F  S P S+   S++  S T     AS    IF
Sbjct: 843  SPSFAFGSSAPGSSPVFSLAVGSGTTSATPASASSPIF 880


>08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931
          Length = 461

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 263 SFLIPCSANKLINLIAFAMLASL 195
           SF +PC  NK+IN++    LA L
Sbjct: 409 SFPVPCKLNKIINMVHAPFLAIL 431


>01_01_0205 + 1764034-1767601,1767934-1767944
          Length = 1192

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 254 IPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIF 141
           IP   NKLINL++  +     NDN   +  ++   IIF
Sbjct: 148 IPMGINKLINLVSLDLSKRYVNDNSDISFNESDDEIIF 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,316,297
Number of Sequences: 37544
Number of extensions: 352891
Number of successful extensions: 823
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)