Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0359
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)               155   3e-38
SB_56029| Best HMM Match : SEA (HMM E-Value=4.7)                       30   1.3  
SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)                    30   1.8  
SB_50794| Best HMM Match : Cys_knot (HMM E-Value=2.2)                  30   1.8  
SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)                 29   3.1  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_51496| Best HMM Match : N2227 (HMM E-Value=5.3e-14)                 28   7.1  
SB_42162| Best HMM Match : 7tm_1 (HMM E-Value=0.0047)                  27   9.4  

>SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)
          Length = 224

 Score =  155 bits (376), Expect = 3e-38
 Identities = 74/103 (71%), Positives = 85/103 (82%), Gaps = 1/103 (0%)
 Frame = +1

Query: 184 LSFDKDASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLF 363
           LSFD +AS+AKA+KFI L+ E GI KER+LIKL+STWEGIQAA+ LE+ HGIHCNLTLLF
Sbjct: 2   LSFDVEASVAKALKFIELYKEAGISKERVLIKLSSTWEGIQAARILERDHGIHCNLTLLF 61

Query: 364 SLY*AIACAEANVTLISPFVGRILDWYVEHT-KKTYEGKEDPG 489
           +   A+ACAEA VTLISPFVGRI DWYV  T +K YE  EDPG
Sbjct: 62  AFVQAVACAEAGVTLISPFVGRIYDWYVAKTGQKEYEPHEDPG 104



 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 37/46 (80%), Positives = 38/46 (82%)
 Frame = +2

Query: 485 PGVVSVTKIYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISP 622
           PGV SVT IYNYYKKFGYKT VMGASFRN G+I  L GCD LTISP
Sbjct: 103 PGVKSVTAIYNYYKKFGYKTVVMGASFRNVGQITGLTGCDKLTISP 148


>SB_56029| Best HMM Match : SEA (HMM E-Value=4.7)
          Length = 111

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 127 GCEILKIIPGRVSVEVDARLSFDKDASIA 213
           GCE+L+  PG  SV VDA + FDK A+++
Sbjct: 50  GCEVLRFRPG--SVVVDAIVYFDKVANVS 76


>SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)
          Length = 521

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 305 KQPKSWRRSMESIVILHCCSLCTKLLPVL 391
           K  + WR S E I+I  CC + TK+L V+
Sbjct: 199 KPIEEWRLSWEVIIIDECCKVQTKVLRVI 227


>SB_50794| Best HMM Match : Cys_knot (HMM E-Value=2.2)
          Length = 396

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 305 KQPKSWRRSMESIVILHCCSLCTKLLPVL 391
           K  + WR S E I+I  CC + TK+L V+
Sbjct: 60  KPIEEWRLSWEVIIIDECCKVQTKVLRVI 88


>SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)
          Length = 899

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = +1

Query: 172 VDARLSFDKDASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNL 351
           +D  +  D   +I K    + L     +  + +LIKLA T E     +ELE K  I C+L
Sbjct: 597 IDGDVMCDVLDAINKNTSLMRLSLYTPVTSDELLIKLAETIEQRTLIEELELK--ISCSL 654

Query: 352 TLLFSLY*AIACAEAN-VTLISPFVGR 429
           T     Y A A +  N +  + P++ +
Sbjct: 655 THNAWSYFARALSTNNSIKALQPYINK 681


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -1

Query: 614  LSANHSRLIHVFPRYYGKMHPLLGSCNQTSCNSCKFLSRK---LLPGSSLP 471
            +S + S ++H+   Y      LLGSCN    N+ + + +    LL GSS+P
Sbjct: 4976 VSQSLSVVVHIPREYCLNASGLLGSCNDEIANNTRTIEQHVNGLLSGSSVP 5026


>SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 296 SQVEANLIKILSFLIPCSANKLINLIAFAMLASLSNDN 183
           + V ANLI  + F +  S  +LINL  + ++A  S +N
Sbjct: 228 NNVAANLISSMRFYVMDSIGRLINLNGYRIVADNSGEN 265


>SB_51496| Best HMM Match : N2227 (HMM E-Value=5.3e-14)
          Length = 248

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 620 D*LSANHSRLIHVFPRYYGKMHPLLGSCNQTSCN 519
           D L ANH +++  FP +  K+   + + NQ  CN
Sbjct: 58  DRLPANHQQMLPDFPNHLQKVSQCIDANNQFLCN 91


>SB_42162| Best HMM Match : 7tm_1 (HMM E-Value=0.0047)
          Length = 419

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 347 LQWIPCFFSNSLAA*IPSQVEANLIKILSFLIPCSANKLINLIAF 213
           + W+PC   + L    P + + ++++ L FL+PC  N L++ + +
Sbjct: 346 VSWLPCVVYSLLVNSNPGKWD-DIVQ-LGFLVPCGVNPLLDPLIY 388


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,528,520
Number of Sequences: 59808
Number of extensions: 425259
Number of successful extensions: 1195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)