Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0359
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12230.1 68414.m01415 transaldolase, putative similar to Swis...    99   3e-21
At5g26610.2 68418.m03181 D111/G-patch domain-containing protein ...    29   1.9  
At5g26610.1 68418.m03180 D111/G-patch domain-containing protein ...    29   1.9  
At3g25130.1 68416.m03138 expressed protein                             29   1.9  
At1g51670.1 68414.m05821 expressed protein                             29   3.3  
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c...    28   5.8  

>At1g12230.1 68414.m01415 transaldolase, putative similar to
           Swiss-Prot:P30148 transaldolase B (EC 2.2.1.2)
           [Escherichia coli O157:H7]
          Length = 405

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 52/141 (36%), Positives = 86/141 (60%), Gaps = 5/141 (3%)
 Frame = +1

Query: 82  KSRVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAEHGIKK 261
           +SR++   +   V  G +++K++PGRVS EVDARL++D +  I K    + L+ E  +  
Sbjct: 136 ESRLSCFFNKAIVNVGGDLVKLVPGRVSTEVDARLAYDTNGIIRKVHDLLRLYNEIDVPH 195

Query: 262 ERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLY*AIACAEANVTLISPFVGRILDW 441
           +R+L K+ +TW+GI+AA+ LE + GI  ++T ++S   A A ++A  ++I  FVGR+ DW
Sbjct: 196 DRLLFKIPATWQGIEAARLLESE-GIQTHMTFVYSFAQAAAASQAGASVIQIFVGRLRDW 254

Query: 442 YVEHTKKT-----YEGKEDPG 489
              H+  T      +  EDPG
Sbjct: 255 ARNHSGDTEIESAIKSGEDPG 275



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 19/52 (36%), Positives = 34/52 (65%)
 Frame = +2

Query: 467 MRARKTPGVVSVTKIYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISP 622
           +++ + PG+  V + YNY  K+GYK+++M A+ RN  ++  L G D + I+P
Sbjct: 268 IKSGEDPGLALVKRSYNYIHKYGYKSKLMAAAVRNKQDLFSLLGVDYV-IAP 318


>At5g26610.2 68418.m03181 D111/G-patch domain-containing protein
           contains Pfam PF01585: G-patch domain
          Length = 301

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
 Frame = +1

Query: 241 AEHGIKKERILIKLASTWEGIQAAKEL-EKKHGIHCNLTLLFSLY*AIACAEANVTLISP 417
           AE  I+++++ I++  T E  +  + L E++  I  ++  +  ++    C++   T++  
Sbjct: 117 AEENIQRKKLDIEIEETEEIAKKREVLAEREQKIQSDVKEIRKVFYCELCSKQYRTVME- 175

Query: 418 FVGRILDWYVEHTKKTYEGKEDPGSSFRDKNLQLLQE 528
           F G +  +   H K+  E KE  G+S RD+  +  Q+
Sbjct: 176 FEGHLSSYDHNHKKRFKEMKEMHGASGRDERKKREQQ 212


>At5g26610.1 68418.m03180 D111/G-patch domain-containing protein
           contains Pfam PF01585: G-patch domain
          Length = 301

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
 Frame = +1

Query: 241 AEHGIKKERILIKLASTWEGIQAAKEL-EKKHGIHCNLTLLFSLY*AIACAEANVTLISP 417
           AE  I+++++ I++  T E  +  + L E++  I  ++  +  ++    C++   T++  
Sbjct: 117 AEENIQRKKLDIEIEETEEIAKKREVLAEREQKIQSDVKEIRKVFYCELCSKQYRTVME- 175

Query: 418 FVGRILDWYVEHTKKTYEGKEDPGSSFRDKNLQLLQE 528
           F G +  +   H K+  E KE  G+S RD+  +  Q+
Sbjct: 176 FEGHLSSYDHNHKKRFKEMKEMHGASGRDERKKREQQ 212


>At3g25130.1 68416.m03138 expressed protein 
          Length = 406

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 278 LIKILSFLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFN 138
           + KILSFL P      + L+A      + +  L S S +T+P  +F+
Sbjct: 52  IFKILSFLSPLFVTTTLLLLALLSTLHVQDTCLDSESLETQPSFLFS 98


>At1g51670.1 68414.m05821 expressed protein
          Length = 178

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 242 LNMVLKKKEF*L--NWPPLGKEFKQPKSWRRSMESI 343
           LN  LKK       +WPPLG E K P S+  ++ S+
Sbjct: 85  LNFALKKGGIPRAEDWPPLGSESKTPSSYEPALVSM 120


>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
           chloroplast (DRT111) nearly identical to SP|P42698
           DNA-damage-repair/toleration protein DRT111, chloroplast
           precursor {Arabidopsis thaliana}; contains Pfam profiles
           PF01585: G-patch domain, PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain)
          Length = 387

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 182 LASTSTDTRPGIIFNISHPKSTLSISKVSATLLFNG 75
           L +  TD R G+I N S  KS+ +  KV  ++  NG
Sbjct: 244 LMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNING 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,391,485
Number of Sequences: 28952
Number of extensions: 305472
Number of successful extensions: 864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)