Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0358
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    29   0.40 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.2  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   2.8  
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    26   2.8  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   3.7  
SPBC1347.11 |sro1||sequence orphan|Schizosaccharomyces pombe|chr...    25   6.5  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   6.5  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   6.5  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    25   8.5  

>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 215  ASADCPAPACKCRFNYRRAANGTCIPTRECPPFD 316
            +  +C     +C +NYRR  +GTC+      P D
Sbjct: 1272 SKCECTRADFECDYNYRRLKDGTCVLVSGLQPPD 1305


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 128 RCPHKEAP*RRQSHLPHATTSHAAVNTIKQKRP 30
           +C  K+   R +SH PH  T+      +   RP
Sbjct: 423 KCVKKQMNYREESHTPHGNTTRKTSTPVSNNRP 455


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -2

Query: 287 CTFRWLRVCS*IYICRLALDSRRSQASDSLTGHRIGSLDSNQKDSPRGT 141
           C   WLRV     ICR  +D    Q +++ T    G   SN  +    T
Sbjct: 422 CIKPWLRVNGTCAICRAPVDPNSQQRNNTSTDSANGHNPSNHANPSTST 470


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 162 LITVQRADAMTSQAVRSLRAPTVQRQPANVDLTT--DAQPTERA 287
           L+T   AD +    + +L    V R P + ++TT  D+ PT+R+
Sbjct: 165 LVTGHNADDIAETILMNLLRGDVARLPRSTEITTQSDSSPTKRS 208


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 122 DSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASAD 226
           D+E   K PVD PSD    S  DD  S   P + +
Sbjct: 284 DNEDEKKPPVDTPSDEAINSDLDDPDSDEAPETEE 318


>SPBC1347.11 |sro1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 106

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 352 RAGIVLFIITVTIERRAFSSRYARSVGCASVVKSTFAGWRWT 227
           + G++   +      +A +SR++ S   AS V  T  GW +T
Sbjct: 6   KQGVISKSLLAATSLKATASRFSFSTSVASRVDGTKNGWSFT 47


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 502 FVWHTDSVLSPEVLFTSTGWFARQYDAYSSNKMALPILR 386
           +V  TD  +  E + T   WF  QYD+Y  N     ++R
Sbjct: 90  YVLWTDESMR-EFIATDYPWFLTQYDSYPYNIERADVVR 127


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +2

Query: 347  CPP-FCPGESCSQATEDGEC 403
            CP  FCP E   Q+TED  C
Sbjct: 1237 CPVCFCPYEKSKQSTEDYYC 1256


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +2

Query: 197 SSCPKPASADCPAPACKCRFNYRRAANGTCIPTRECP 307
           SSCP      CP       F+Y   +N T + T   P
Sbjct: 419 SSCPLDLGFACPKAGYGLEFSYGEVSNVTGLITCNAP 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,094
Number of Sequences: 5004
Number of extensions: 47245
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)