Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0358
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 32 0.23
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 31 0.69
10_01_0274 - 2901033-2901778,2902475-2902634 30 1.2
09_06_0200 + 21539963-21541271,21541912-21542013,21542095-215422... 30 1.2
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391... 30 1.2
06_02_0276 + 13678457-13678734,13679592-13679931,13680025-136802... 29 1.6
01_06_0233 + 27735881-27736238,27736337-27736453,27736559-277367... 29 1.6
09_04_0183 + 15389691-15390197,15391259-15391582 29 2.1
08_02_0972 - 23187294-23188034 29 2.8
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 29 2.8
06_01_0113 + 886899-886906,887029-887107,887390-887458,887547-88... 29 2.8
01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872 29 2.8
10_08_0462 - 18116135-18116785 28 3.7
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 28 3.7
02_02_0666 - 12757555-12757688,12757968-12758029,12758156-127582... 28 3.7
01_06_1092 + 34469732-34470118 28 3.7
06_01_0816 - 6171189-6171255,6171277-6171441,6172037-6172618,617... 28 4.9
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 28 4.9
01_06_1733 + 39537618-39537722,39537865-39538028,39539796-395401... 28 4.9
01_01_0140 + 1265785-1265902,1266424-1266845 28 4.9
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 27 6.5
06_02_0225 + 13257655-13260693 27 6.5
05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,675... 27 6.5
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084... 27 6.5
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565... 27 6.5
04_04_0202 - 23573425-23573949,23574285-23574593 27 6.5
04_04_0117 - 22885359-22887065 27 6.5
03_01_0121 + 940338-940637,941023-941324,941417-941969,943889-94... 27 6.5
12_01_0270 + 1969199-1969714 27 8.6
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145... 27 8.6
06_03_0673 + 23394027-23394094,23394267-23394539,23394613-233949... 27 8.6
06_03_0297 + 19267491-19267677,19267799-19267843,19268466-192685... 27 8.6
04_03_0709 + 18902507-18902704,18902795-18905028,18905114-189053... 27 8.6
03_06_0028 + 31141652-31141769,31142609-31142733,31143234-311433... 27 8.6
02_04_0386 - 22529291-22529418,22529860-22529941 27 8.6
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +2
Query: 110 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKC 250
PPC +K P DC C C+ PKP + P P C C
Sbjct: 87 PPCKPPPC-EKPPEDCKPKPCHCCSCEKPKPKPKPCHCEKPKP-CHC 131
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 30.7 bits (66), Expect = 0.69
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +2
Query: 143 CPVDC--PSDYCPTSRCDDQSSCPKPASADCPAP 238
CP C P + P C D+ CP P CP P
Sbjct: 109 CPCSCSTPCSFPPIG-CHDRGICPPPCPPPCPLP 141
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/67 (31%), Positives = 23/67 (34%)
Frame = +2
Query: 164 DYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRAANGTCIPTRECPPFDCDGDNEEYN 343
+YC + CP S C P C G C P CPP C
Sbjct: 96 EYCEKCNVKLKPGCPCSCSTPCSFPPIGCH------DRGICPP--PCPP-PCP------L 140
Query: 344 PCPPFCP 364
PCPP CP
Sbjct: 141 PCPPPCP 147
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = +2
Query: 230 PAPACKCRFNYRRAANGTCIPTRECPPFDCDGDNEEYNPC-PPFCPGESCSQ 382
PAP C C G P ECPP D G + C PP P C Q
Sbjct: 183 PAPGCSCSPPSTPPGYGQ--PAPECPPAD-PGYGQPAPECPPPPTPAPECGQ 231
>09_06_0200 +
21539963-21541271,21541912-21542013,21542095-21542291,
21542396-21542603,21542685-21542922,21543010-21543160,
21543538-21543849
Length = 838
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 131 ILDKCPVDC-PSDYC-PTSRCDDQSSCPKPASADCPAPACKCRFNYRRAA 274
+L + P C P D+C P CD +A+ P PAC+C + A+
Sbjct: 282 VLQEWPAGCDPYDFCGPNGYCDS-------TAAEAPLPACRCLDGFEPAS 324
>04_04_1120 +
31037811-31038813,31038903-31038991,31039094-31039163,
31039270-31039353,31039452-31039528,31039631-31039712,
31039847-31039929,31040270-31040333,31040435-31040566,
31040674-31040777,31040901-31040996,31041144-31041251
Length = 663
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 95 DDVTEPPCADSEILD-KCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACK 247
D T C+DS++ KCP D C+D C + + CP +CK
Sbjct: 488 DGKTFSACSDSDLSGCKCPPGFKGDGL---HCEDVDECSEKLACSCPHCSCK 536
>06_02_0276 +
13678457-13678734,13679592-13679931,13680025-13680243,
13680328-13680420
Length = 309
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 474 LQKYFLHLQAGLHGN-TMPILPTRWHSPSSVACEQLSP 364
+Q+Y L L A L N P++P PSS AC + +P
Sbjct: 27 IQRYLLQLHACLDENGPRPVIPLSHGDPSSSACFRTAP 64
>01_06_0233 +
27735881-27736238,27736337-27736453,27736559-27736713,
27736796-27736870,27736934-27737242,27737431-27737742,
27737844-27738218
Length = 566
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 491 HRLRPVSRSTFYIYRLVCTAIRCLFFQQDGTPHPPSPANSSLRGRKEGRDC 339
H LR S F R + + F +P PP P++SS RG GR C
Sbjct: 5 HLLRGHSLDRFLPIRSLIMSSSSSF--SSSSPSPPPPSSSSSRGSSSGRWC 53
>09_04_0183 + 15389691-15390197,15391259-15391582
Length = 276
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 212 PASADCPAPACKCRFNYRRAANGTCIPTRECPPFDCD 322
P + C P C F Y N T +PT P DC+
Sbjct: 167 PLESGCCKPPSSCNFLYVSGTNWTKVPTNSSDP-DCN 202
>08_02_0972 - 23187294-23188034
Length = 246
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/79 (24%), Positives = 32/79 (40%)
Frame = +3
Query: 201 AVRSLRAPTVQRQPANVDLTTDAQPTERAYRLENALLSIVTVIMKSTIPALLSAPERAVX 380
A+R + QP N+D T P R R+ S+ + + I + +R V
Sbjct: 126 AMREMIFHIAALQPVNIDPETVRPPKRRNVRISTDPQSVAARMRRERISERIRILQRLVP 185
Query: 381 XXXXMGSAILLEE*ASYCR 437
M +A +L+E Y +
Sbjct: 186 GGTKMDTASMLDEAIHYVK 204
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 155 CPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRAANGTCIP 292
CP+ P RC D P PA+A P + R A NGT P
Sbjct: 11 CPNAANPFHRCADYCPVPAPAAATAKPPPPPP--SSRPAQNGTAAP 54
>06_01_0113 +
886899-886906,887029-887107,887390-887458,887547-887636,
887725-887863,888466-888568,888664-888716,888801-888867,
889147-889255,889499-889567,889676-889745,889833-889952,
890052-890201,890611-890873
Length = 462
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = -1
Query: 489 QTPSCLQKYFLHLQAGLHGNTM--PILP--TR-WHSPS 391
+ PS F+ ++A HGNTM P+ P TR WH+P+
Sbjct: 403 RVPSLASDKFVDMKARTHGNTMKRPLPPVGTRTWHAPA 440
>01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872
Length = 686
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 487 DSVLSPEVLFTSTGWFARQYDAYSSNKMALPILRRLRTALSGAE 356
DS +PEV+ T G + + D YS M L ++R R GA+
Sbjct: 568 DSYDAPEVVSTKFGAVSSKSDVYSYGVMVLEMIRAKRRINVGAD 611
>10_08_0462 - 18116135-18116785
Length = 216
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 140 KCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRAANG 280
KC SD C T R Q C P S+ P PA ++ R +G
Sbjct: 68 KCNRAHGSDCCVTGRRYPQFRCSPPVSSARPTPATLTLNSFARGGDG 114
>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
Length = 234
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +2
Query: 56 LQRGSSSREADATDDVTEPPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPA 235
L SS + A TEPP + S + T D ++ +P++ D PA
Sbjct: 15 LSSPSSKPKTKALSHSTEPPLSASSAPRRAAAKDAKIGTETPAADGDAARKRPSAGDAPA 74
Query: 236 PA 241
PA
Sbjct: 75 PA 76
>02_02_0666 -
12757555-12757688,12757968-12758029,12758156-12758223,
12758359-12758490,12759116-12759351,12759451-12759648,
12760123-12760213,12760566-12760710,12760837-12760955
Length = 394
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -2
Query: 428 RCLFFQQDGTPHPPSPANSSLRGRKEGRDC 339
RC F DGT P NSSL G EG C
Sbjct: 160 RCRLFVADGTSFSILPVNSSL-GNGEGSTC 188
>01_06_1092 + 34469732-34470118
Length = 128
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = +2
Query: 68 SSSREADATDDVTEPPCADSEILDKCPVDC--PSDYCPTSRCDDQSSCPKPASA 223
SSS EA+ +D P CPV C P C CP+ A A
Sbjct: 31 SSSAEAEVSDPCAAPVSDGGSEAQLCPVRCFRPDPVCGADGVTYWCGCPEAACA 84
>06_01_0816 -
6171189-6171255,6171277-6171441,6172037-6172618,
6173451-6173761
Length = 374
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 435 GNTMPILPTRWHSPSSVACEQLSPGQKGGQGLYSSLSPSQSKGGHSLVGMHVPL 274
G + L RW S +AC+ Q ++SL P +S + + MH PL
Sbjct: 289 GQGLEGLEVRWIGISYMACQLSLARQATPDICHASLLPRRSLSDSATLAMHAPL 342
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 459 LHLQAGLHGNTMPILPTRWHSPSSV 385
+HL LHGN P RW P+ +
Sbjct: 336 VHLNPLLHGNAQQFQPCRWEMPNKL 360
>01_06_1733 +
39537618-39537722,39537865-39538028,39539796-39540102,
39540914-39541221,39541421-39541580
Length = 347
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 149 VDCPSDYCPTSRCDDQSSCPK-PASADCPAPACKCR 253
+DC S C T C + + PA+A CPA A CR
Sbjct: 214 MDCLSHIC-TEGCTEVGPVGRAPAAAPCPAYATACR 248
>01_01_0140 + 1265785-1265902,1266424-1266845
Length = 179
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -1
Query: 363 GQKGGQGLYSSLSPSQSKGGHSLVGMHVPLAAR 265
G G GLY+SL P Q G + P AR
Sbjct: 6 GGSGNSGLYNSLEPQQKPGAGKPTSSNQPSPAR 38
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 206 PKPASADCPAPACKCRFNYRRAANGTCIP 292
P A A+C P CK + Y R+ C P
Sbjct: 33 PFVACAECGFPVCKPCYEYERSEGTQCCP 61
>06_02_0225 + 13257655-13260693
Length = 1012
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 445 WFARQYDAYSSNKMALP-ILRRLRTALSGAERR 350
W R+YD + +LP ++RR AL+ ER+
Sbjct: 339 WIKREYDEFKIRVNSLPDLIRRRANALNARERK 371
>05_02_0115 -
6758540-6758771,6759417-6759524,6759670-6759840,
6759967-6760077,6760562-6760663,6761139-6761366,
6761568-6761696,6761753-6761869,6761955-6762301,
6762377-6762931,6763104-6763182,6763429-6763595,
6763857-6764075,6764956-6765139,6765175-6765371,
6765717-6766035,6766379-6766538,6767642-6767794,
6767911-6768013
Length = 1226
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 95 DDVTEPPCADSEILDKCPVDCPSDYCPTS-RCDDQSSCP-KPASAD 226
D V EPP + E + +D P + TS D S C +P+ AD
Sbjct: 580 DSVAEPPLTEQEKVVSNGMDAPDELAGTSVNLDSTSHCEGEPSRAD 625
>04_04_1536 -
34207425-34207490,34207801-34208268,34208345-34208485,
34208582-34208820,34209950-34210436
Length = 466
Score = 27.5 bits (58), Expect = 6.5
Identities = 20/73 (27%), Positives = 26/73 (35%)
Frame = +2
Query: 146 PVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRAANGTCIPTRECPPFDCDG 325
P P P CDD SCP ++ C C F +R C+ CP
Sbjct: 373 PPTPPPPSAPDHVCDDNFSCPAGST-------CCCAFGFR----NLCLVWGCCPVEGATC 421
Query: 326 DNEEYNPCPPFCP 364
+ + CPP P
Sbjct: 422 CKDHASCCPPDYP 434
>04_04_0456 -
25355409-25355751,25356047-25356205,25356317-25356513,
25356602-25356794,25357044-25358287
Length = 711
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 326 DNEEYNPCPPFCPGESCSQATEDGECHLVGR 418
D++E PF P SC +D CH GR
Sbjct: 366 DDDEGGGAYPFYPPGSCPHIDDDFNCHKNGR 396
>04_04_0202 - 23573425-23573949,23574285-23574593
Length = 277
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 305 PPFDCDGDNEEYNPCPP 355
PP D DGD ++Y P PP
Sbjct: 221 PPDDDDGDIDDYVPAPP 237
>04_04_0117 - 22885359-22887065
Length = 568
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/85 (24%), Positives = 37/85 (43%)
Frame = +3
Query: 186 AMTSQAVRSLRAPTVQRQPANVDLTTDAQPTERAYRLENALLSIVTVIMKSTIPALLSAP 365
A + ++V SL APT+ ++ LTT TE + + + KS + ++ SA
Sbjct: 46 ATSGKSVESLCAPTLYKESCEKTLTTATSGTENP-------KEVFSTVAKSALESIKSAV 98
Query: 366 ERAVXXXXXMGSAILLEE*ASYCRA 440
E++ S + E C+A
Sbjct: 99 EKSKAIGEAKTSDSMTESAREDCKA 123
>03_01_0121 +
940338-940637,941023-941324,941417-941969,943889-944848
Length = 704
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +2
Query: 269 AANGTCIPTRECPPFDC----DGDNEEYNPCPPFCPGESCSQATEDGECHL 409
A+ C+ E P DG + +CP E+C A+EDGE H+
Sbjct: 394 ASESECVAVAEPPHVHVHLHPDGTEPLAHIAVDYCP-EACHHASEDGEIHV 443
>12_01_0270 + 1969199-1969714
Length = 171
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -2
Query: 287 CTFRWLRVCS*IYICRLALDSRRSQASDSLTGHRIGS 177
C F WLR+ +CR L S+ S+ R+ +
Sbjct: 128 CIFSWLRISRICPVCRFTLPSQADFESEKAEKERVSA 164
>09_02_0601 +
11112201-11112386,11112471-11114080,11114345-11114579,
11115233-11115358
Length = 718
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 95 QSHLPHATTSHAAVNTIKQKRPISTLV 15
Q H+P+ TTS NT++ +R I L+
Sbjct: 489 QVHIPNGTTSEPKSNTLEPRRIIPKLI 515
>06_03_0673 +
23394027-23394094,23394267-23394539,23394613-23394958,
23395031-23395168,23395260-23395385,23395464-23395652,
23395723-23396202,23396274-23397236
Length = 860
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 122 DSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRA 271
D E + PV+CP +S D P+P S+ P+ + YR A
Sbjct: 2 DGESPEIMPVECPDPEPASSESGDDHDIPEPLSSRLSVPSGELNL-YRAA 50
>06_03_0297 +
19267491-19267677,19267799-19267843,19268466-19268542,
19268652-19268774,19269029-19269133,19269217-19269289,
19269588-19269690,19269890-19270144,19270996-19271125,
19271278-19271352,19271470-19271550
Length = 417
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +2
Query: 323 GDNEEYNPCPPFCPGESCSQATEDGECH 406
GD+ + P PP C + A + +CH
Sbjct: 20 GDDGSHKPLPPCCLKAKAAAAESEAKCH 47
>04_03_0709 +
18902507-18902704,18902795-18905028,18905114-18905365,
18905446-18905556,18905646-18905727,18906002-18906193
Length = 1022
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 95 QSHLPHATTSHAAVNTIKQKRPISTLV 15
Q H+P+ TTS NT++ +R I L+
Sbjct: 646 QVHIPNGTTSEPKSNTLEPRRIIPKLI 672
>03_06_0028 +
31141652-31141769,31142609-31142733,31143234-31143380,
31143750-31143884
Length = 174
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 237 QPANVDLTTDAQPTERAYRLENALLSIVTVIM 332
Q ANVDLTTDA T Y L+I ++
Sbjct: 39 QGANVDLTTDAGRTALHYAASKGRLNIAETLI 70
>02_04_0386 - 22529291-22529418,22529860-22529941
Length = 69
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +2
Query: 299 ECPPFDCDGDNEEYNPCPPFCPGESCSQATEDGECH 406
+C P +C G + C +C G S G+CH
Sbjct: 30 KCGPCNCKGCCDYDGKCMSYCSGHSGPCCKWKGKCH 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,988,194
Number of Sequences: 37544
Number of extensions: 397908
Number of successful extensions: 1650
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -