BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= P5PG0358 (504 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g32190.1 68414.m03959 expressed protein 32 0.25 At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nea... 31 0.58 At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nea... 31 0.58 At3g46050.1 68416.m04983 kelch repeat-containing F-box family pr... 30 0.77 At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein ... 30 1.0 At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nea... 30 1.0 At2g18470.1 68415.m02151 protein kinase family protein contains ... 29 1.3 At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim... 29 1.8 At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) near... 29 2.4 At2g14720.2 68415.m01657 vacuolar sorting receptor, putative ide... 29 2.4 At2g14720.1 68415.m01656 vacuolar sorting receptor, putative ide... 29 2.4 At4g31620.1 68417.m04492 transcriptional factor B3 family protei... 28 3.1 At2g22140.1 68415.m02630 expressed protein ; expression supporte... 28 3.1 At5g60930.1 68418.m07643 chromosome-associated kinesin, putative... 28 4.1 At5g15360.1 68418.m01798 hypothetical protein 27 5.4 At3g27580.1 68416.m03446 protein kinase, putative similar to ser... 27 5.4 At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing pro... 27 5.4 At5g54370.1 68418.m06770 late embryogenesis abundant protein-rel... 27 7.2 At4g16230.1 68417.m02463 GDSL-motif lipase/hydrolase family prot... 27 7.2 At4g11910.1 68417.m01894 expressed protein hypothetical protein ... 27 7.2 At3g22640.1 68416.m02858 cupin family protein contains similarit... 27 7.2 At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ... 27 7.2 At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 27 7.2 At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 27 7.2 At1g23040.1 68414.m02878 hydroxyproline-rich glycoprotein family... 27 7.2 At5g38260.1 68418.m04612 serine/threonine protein kinase, putati... 27 9.5 At4g21590.1 68417.m03126 bifunctional nuclease, putative similar... 27 9.5 At4g21585.1 68417.m03124 bifunctional nuclease, putative similar... 27 9.5 At1g62870.1 68414.m07099 expressed protein 27 9.5 >At1g32190.1 68414.m03959 expressed protein Length = 422 Score = 31.9 bits (69), Expect = 0.25 Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 2/85 (2%) Frame = +2 Query: 155 CPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRAANGTCIPTRECPPFDCDGDNE 334 CP CP C C C P K F+ +C+ + CP F C Sbjct: 307 CPKPRCPKPSCSCGCGCGDCGCFKCSCPTLKGCFSC--CKKPSCVSSCCCPTFKCSSCFG 364 Query: 335 EYNPCPPFCPGESCSQATE--DGEC 403 + P CP SC + + D EC Sbjct: 365 K-----PKCPKCSCWKCLKCPDTEC 384 Score = 31.1 bits (67), Expect = 0.44 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = +2 Query: 170 CPTSRCDDQSSCPKPASADCPAPACKC 250 C + C SCPKP CP P+C C Sbjct: 296 CCSGLCRPSCSCPKPR---CPKPSCSC 319 >At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nearly identical to vacuolar sorting receptor homolog [Arabidopsis thaliana] GI:1737220; contains a calcium-binding EGF-like domain signature Length = 628 Score = 30.7 bits (66), Expect = 0.58 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Frame = +2 Query: 116 CADSEILDKCPVDCPSDYCP--TSRCDDQSSCPKPASADCPAPACKCRF-NYRRAANGTC 286 C D + + KC +CP + T +C+D + C + + CP +CK + +Y + +G Sbjct: 493 CVDKDSV-KC--ECPPGFKGDGTKKCEDINECKEKKACQCPECSCKNTWGSYECSCSGDL 549 Query: 287 IPTRE 301 + R+ Sbjct: 550 LYIRD 554 >At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nearly identical to vacuolar sorting receptor homolog [Arabidopsis thaliana] GI:1737220; contains a calcium-binding EGF-like domain signature Length = 628 Score = 30.7 bits (66), Expect = 0.58 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Frame = +2 Query: 116 CADSEILDKCPVDCPSDYCP--TSRCDDQSSCPKPASADCPAPACKCRF-NYRRAANGTC 286 C D + + KC +CP + T +C+D + C + + CP +CK + +Y + +G Sbjct: 493 CVDKDSV-KC--ECPPGFKGDGTKKCEDINECKEKKACQCPECSCKNTWGSYECSCSGDL 549 Query: 287 IPTRE 301 + R+ Sbjct: 550 LYIRD 554 >At3g46050.1 68416.m04983 kelch repeat-containing F-box family protein contains F-box domain Pfam:PF00646 and Kelch motif Pfam:PF01344 Length = 370 Score = 30.3 bits (65), Expect = 0.77 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = -1 Query: 486 TPSCLQKY--FLHLQAGLHGNTMPILPTRWHSPSSVACEQLSP 364 T SC+ K FL++ LH N P P RW S + ++L P Sbjct: 60 TRSCIGKTESFLYVCLDLHRNCYPDCPPRWFIVSPITKQKLKP 102 >At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type Length = 271 Score = 29.9 bits (64), Expect = 1.0 Identities = 18/59 (30%), Positives = 23/59 (38%) Frame = +2 Query: 131 ILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRAANGTCIPTRECP 307 +L+ C +D C CD S KP S P K R AN +C P + P Sbjct: 131 LLNTTDTKCLADLCGALHCDFVLSSKKPKSKCNPPAVAKNRHLCESVAN-SCFPVSQGP 188 >At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nearly identical to vacuolar sorting receptor homolog (GP:1737218) [Arabidopsis thaliana] Length = 623 Score = 29.9 bits (64), Expect = 1.0 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Frame = +2 Query: 104 TEPPCADSEILD-KCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKCR 253 T C D D KCP+ D C+D C + C P CKC+ Sbjct: 484 TYSACVDDHSKDCKCPLGFKGD--GVKNCEDVDECKEKTVCQC--PECKCK 530 >At2g18470.1 68415.m02151 protein kinase family protein contains Pfam PF00069: Protein kinase domain Length = 633 Score = 29.5 bits (63), Expect = 1.3 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Frame = +2 Query: 68 SSSREADATDDVTEP-PCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAP 238 SS A T+ + P P +++ P PS PT D SS P P S PAP Sbjct: 3 SSPESAPPTNSTSSPSPPSNTNSTTSSP-PAPSPPSPTPPQGDSSSSPPPDSTSPPAP 59 >At2g34940.1 68415.m04289 vacuolar sorting receptor, putative similar to BP-80 vacuolar sorting receptor [Pisum sativum] GI:1737222 Length = 618 Score = 29.1 bits (62), Expect = 1.8 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = +2 Query: 101 VTEPPCADSEILD-KCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNY 262 +T C+DSE +CP+ D +C+D C K SA C CKC+ N+ Sbjct: 484 LTFSSCSDSETSGCRCPLGFLGDGL---KCEDIDEC-KEKSA-CKCDGCKCKNNW 533 >At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) nearly identical to RelA/SpoT homolog RSH2 [Arabidopsis thaliana] GI:7141306; contains Pfam profiles PF01966: HD domain, PF04607: Region found in RelA / SpoT proteins Length = 709 Score = 28.7 bits (61), Expect = 2.4 Identities = 15/56 (26%), Positives = 27/56 (48%) Frame = +2 Query: 23 LKWDVFVLSY*LQRGSSSREADATDDVTEPPCADSEILDKCPVDCPSDYCPTSRCD 190 ++W +V+++ + S R + ++ D +PPC DCP+ Y P S D Sbjct: 548 VEWARWVVTWHCEAMSKDRSSISSSDSIKPPCK----FPSHSEDCPASYKPNSSQD 599 >At2g14720.2 68415.m01657 vacuolar sorting receptor, putative identical to GB:U79960 GI:1737220; contains a calcium-binding EGF-like domain signature Length = 628 Score = 28.7 bits (61), Expect = 2.4 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Frame = +2 Query: 116 CADSEILDKCPVDCPSDYCP--TSRCDDQSSCPKPASADCPAPACKCRF-NYRRAANGTC 286 C D + + KC +CP + +C+D + C + + CP +CK + +Y + +G Sbjct: 493 CVDKDSV-KC--ECPPGFKGDGVKKCEDINECKEKKACQCPECSCKNTWGSYECSCSGDL 549 Query: 287 IPTRE 301 + R+ Sbjct: 550 LYMRD 554 >At2g14720.1 68415.m01656 vacuolar sorting receptor, putative identical to GB:U79960 GI:1737220; contains a calcium-binding EGF-like domain signature Length = 628 Score = 28.7 bits (61), Expect = 2.4 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Frame = +2 Query: 116 CADSEILDKCPVDCPSDYCP--TSRCDDQSSCPKPASADCPAPACKCRF-NYRRAANGTC 286 C D + + KC +CP + +C+D + C + + CP +CK + +Y + +G Sbjct: 493 CVDKDSV-KC--ECPPGFKGDGVKKCEDINECKEKKACQCPECSCKNTWGSYECSCSGDL 549 Query: 287 IPTRE 301 + R+ Sbjct: 550 LYMRD 554 >At4g31620.1 68417.m04492 transcriptional factor B3 family protein low similarity to reproductive meristem gene 1 from [Brassica oleracea var. botrytis] GI:3170424, [Arabidopsis thaliana] GI:13604227; contains Pfam profile PF02362: B3 DNA binding domain Length = 492 Score = 28.3 bits (60), Expect = 3.1 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%) Frame = -3 Query: 427 DAYSSNKMALPILRRLRTALSGAERRAGIVLFIITVTIERRAFSSRYARSVG----CASV 260 D S ++L R S +E+ + L + + R +F+ ++R+ G C + Sbjct: 129 DDSDSKNISLKKKSRFEAESSSSEKYCLLGLTASNLRLNRVSFTKHFSRANGLTKRCCMI 188 Query: 259 VKSTFAGWRWTVGARRLRTA*LVIASARW 173 +G WT+G R + RW Sbjct: 189 DLMNLSGESWTLGLRHNKRTGQAFIRGRW 217 >At2g22140.1 68415.m02630 expressed protein ; expression supported by MPSS Length = 506 Score = 28.3 bits (60), Expect = 3.1 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -2 Query: 245 CRLALDSRRSQASDSLTGHRIGSLDSNQKDSPR 147 C + S D +G RI SLDS +DSPR Sbjct: 69 CSFGSRALASNREDKFSGKRIISLDSEFEDSPR 101 >At5g60930.1 68418.m07643 chromosome-associated kinesin, putative microtubule-associated motor KIF4 , Mus musculus, PIR:A54803 Length = 1294 Score = 27.9 bits (59), Expect = 4.1 Identities = 18/62 (29%), Positives = 24/62 (38%) Frame = +2 Query: 152 DCPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRAANGTCIPTRECPPFDCDGDN 331 + PSD S D C S+ C C+CR A G+C P+ C C N Sbjct: 1046 ETPSDDAVKS---DVCCCTCSKSSSCKTMKCQCR-----ATKGSCGPSCGCSSVKCSNRN 1097 Query: 332 EE 337 + Sbjct: 1098 AD 1099 >At5g15360.1 68418.m01798 hypothetical protein Length = 253 Score = 27.5 bits (58), Expect = 5.4 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +2 Query: 362 PGESC-SQATEDGECHLVGRIGIVLPC 439 P +C EDG+CHL G + + L C Sbjct: 43 PASTCLGPIGEDGDCHLPGGLALPLDC 69 >At3g27580.1 68416.m03446 protein kinase, putative similar to serine/threonine protein kinase [Arabidopsis thaliana] gi|217861|dbj|BAA01715 Length = 578 Score = 27.5 bits (58), Expect = 5.4 Identities = 13/28 (46%), Positives = 13/28 (46%) Frame = +2 Query: 161 SDYCPTSRCDDQSSCPKPASADCPAPAC 244 S YC C DQSSC DC P C Sbjct: 351 SSYCIQPTCVDQSSC--IVQPDCIQPVC 376 >At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein similar to SP|Q01780 Polymyositis/scleroderma autoantigen 2 {Homo sapiens}; contains Pfam profiles PF00570: HRDC domain, PF01612: 3'-5' exonuclease Length = 738 Score = 27.5 bits (58), Expect = 5.4 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +2 Query: 71 SSREADATDDVTEPPCADSEILDKCPVDCPSDYCPTSRCDDQSS 202 S++ ADA D V+E P S L + P C ++ DD S Sbjct: 669 STKAADALDRVSETPSKGSPSLTQKPKTCNTEVIVLDDDDDSES 712 >At5g54370.1 68418.m06770 late embryogenesis abundant protein-related / LEA protein-related similar to late embryogenesis abundant protein (GI:1350543)[Picea glauca] Length = 337 Score = 27.1 bits (57), Expect = 7.2 Identities = 14/43 (32%), Positives = 19/43 (44%) Frame = +2 Query: 140 KCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRR 268 +CP +CPS S+ K ADC P CK + R+ Sbjct: 42 RCPEECPSKTAMNSK-------NKVCYADCDRPTCKSQCRMRK 77 >At4g16230.1 68417.m02463 GDSL-motif lipase/hydrolase family protein similar to SP|P40602 Anther-specific proline-rich protein APG precursor {Arabidopsis thaliana}; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase Length = 340 Score = 27.1 bits (57), Expect = 7.2 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 5/29 (17%) Frame = +2 Query: 401 CHLVGRIGIVLPCKP---AC--RCKKYFW 472 C LVG++G ++PC P C R K FW Sbjct: 272 CSLVGKVGGLIPCGPPSKVCMDRSKYVFW 300 >At4g11910.1 68417.m01894 expressed protein hypothetical protein F7H19.100 -Arabidopsis thaliana,PID:e1310060 Length = 466 Score = 27.1 bits (57), Expect = 7.2 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%) Frame = +2 Query: 335 EYNPCPPFCP-GESCSQATEDGECHLVGRIGIVLPCKPACRC 457 EYN + P E+ SQ DG H LPC C+C Sbjct: 191 EYNKVECWGPLWEAMSQHQHDGRTHKKSETLPELPCPDECKC 232 >At3g22640.1 68416.m02858 cupin family protein contains similarity to vicilin-like protein precursor [Juglans regia] GI:6580762, vicilin precursor [Theobroma cacao] PIR|S22477, vicilin precursor [Macadamia integrifolia] GI:5852872 Length = 486 Score = 27.1 bits (57), Expect = 7.2 Identities = 13/47 (27%), Positives = 25/47 (53%) Frame = -1 Query: 450 QAGLHGNTMPILPTRWHSPSSVACEQLSPGQKGGQGLYSSLSPSQSK 310 Q+ +G T +L T ++ P + ++ ++ GQG+ +SP Q K Sbjct: 200 QSYFNGFTKEVLSTSFNVPEELLGRLVTRSKEIGQGIIRRISPDQIK 246 >At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) and Pfam domain, PF00023: Ankyrin repeat Length = 716 Score = 27.1 bits (57), Expect = 7.2 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = -1 Query: 441 LHGNTMPILPTRWHSPSSVACEQLSPGQKGGQGLYSSLSPSQSKGGHSLVGMHVP 277 L+ +T +P+ + A L PG G + S LSPS + G S M P Sbjct: 365 LYASTGSAVPSPRSNADYAAALSLLPGSPSGVSVMSPLSPSAAGNGMSHSNMAWP 419 >At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD) similar to transcriptional activator HBRM [Homo sapiens] GI:414117; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain; identical to cDNA putative chromatin remodeling protein SYD (SPLAYED) GI:13603720 Length = 3529 Score = 27.1 bits (57), Expect = 7.2 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -2 Query: 392 PPSPANSSLRGRKEGRDCTLHYHRHNRKEGIL 297 P SPA + +RGR GR R R EG+L Sbjct: 1522 PASPAPTPIRGRGRGRSRGRGAGRGRRVEGVL 1553 >At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD) similar to transcriptional activator HBRM [Homo sapiens] GI:414117; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain; identical to cDNA putative chromatin remodeling protein SYD (SPLAYED) GI:13603720 Length = 3574 Score = 27.1 bits (57), Expect = 7.2 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -2 Query: 392 PPSPANSSLRGRKEGRDCTLHYHRHNRKEGIL 297 P SPA + +RGR GR R R EG+L Sbjct: 1522 PASPAPTPIRGRGRGRSRGRGAGRGRRVEGVL 1553 >At1g23040.1 68414.m02878 hydroxyproline-rich glycoprotein family protein contains proline-rich domains, INTERPRO:IPR000694 Length = 144 Score = 27.1 bits (57), Expect = 7.2 Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 4/81 (4%) Frame = +2 Query: 71 SSREADATDDVTEPPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKP----ASADCPAP 238 +S EA D+V C+ S I + P P P C + P P S+ CP P Sbjct: 36 ASLEARKLDEVDPIKCSPSCIQNPPPPSPPPPSPPPPACPPPPALPPPPPKKVSSYCPPP 95 Query: 239 ACKCRFNYRRAANGTCIPTRE 301 F Y G P E Sbjct: 96 P-PANFLYITGPPGNLYPVDE 115 >At5g38260.1 68418.m04612 serine/threonine protein kinase, putative similar to receptor serine/threonine kinase PR55K gi|1235680|gb|AAC49208; contains protein kinase domain, Pfam:PF00069; contains serine/threonine protein kinase domain, INTERPRO:IPR002290 Length = 638 Score = 26.6 bits (56), Expect = 9.5 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = -2 Query: 446 LVCTAIRCLFFQQDGTPHPPSPANSSLRG 360 L+ + C FFQ+ T H P +++L+G Sbjct: 276 LITVCLLCFFFQKRRTSHHLRPRDNNLKG 304 >At4g21590.1 68417.m03126 bifunctional nuclease, putative similar to bifunctional nuclease [Zinnia elegans] gi|4099833|gb|AAD00694 Length = 294 Score = 26.6 bits (56), Expect = 9.5 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +2 Query: 191 DQSSCPKPASADCPAPACKCRFNYRRAANGTCI 289 +Q++CP P +++ ACK + YR A GT + Sbjct: 224 NQTACPNPYASESIDLACK--YAYRNATAGTTL 254 >At4g21585.1 68417.m03124 bifunctional nuclease, putative similar to bifunctional nuclease [Zinnia elegans] gi|4099833|gb|AAD00694 Length = 299 Score = 26.6 bits (56), Expect = 9.5 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +2 Query: 191 DQSSCPKPASADCPAPACKCRFNYRRAANGTCI 289 +Q++CP P +++ ACK + YR A GT + Sbjct: 229 NQTACPNPYASESINLACK--YAYRNATPGTTL 259 >At1g62870.1 68414.m07099 expressed protein Length = 796 Score = 26.6 bits (56), Expect = 9.5 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -2 Query: 401 TPHPPSPANSSLRGRKEGRDCTLHYHRHN 315 +P PP P +SS R R L++H H+ Sbjct: 120 SPSPPPPPSSSHRKRNSSAVEALNHHHHH 148 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,091,660 Number of Sequences: 28952 Number of extensions: 280179 Number of successful extensions: 942 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 875 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 930 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 898188928 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -