Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0357
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68670.1 68414.m07846 myb family transcription factor contain...    27   5.4  
At1g13300.1 68414.m01544 myb family transcription factor contain...    27   7.2  
At4g37330.1 68417.m05287 cytochrome P450 family protein                27   9.5  
At1g50890.1 68414.m05722 expressed protein                             27   9.5  

>At1g68670.1 68414.m07846 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 354

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 375 RCSERTEGI-SLTVFETFLPLSPVGLLLQQLPDEQ 476
           +CSE+T  +    VFE F+P+  +  L +++ +E+
Sbjct: 63  QCSEQTTSVCGGPVFEEFIPIKKISSLCEEVQEEE 97


>At1g13300.1 68414.m01544 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 344

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 366 GQPRCSERTEGISLTVFETFLPL 434
           GQP CSE+T G    V E FL +
Sbjct: 66  GQPECSEQTTGECGPVLEQFLTI 88


>At4g37330.1 68417.m05287 cytochrome P450 family protein
          Length = 492

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 364 KDNHVVANELKALASLYLKRSYHYLLSASYFNNYQTNR 477
           K++ V+AN  K   S +L  +  YLLSASY ++++  R
Sbjct: 93  KNDVVLANRPKFTISKHLGYNATYLLSASYGDHWRNLR 130


>At1g50890.1 68414.m05722 expressed protein
          Length = 821

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 260 LWVCWPRKTHAIRTSTKDA 316
           +W CW    HA+R    D+
Sbjct: 679 IWTCWSNSVHALRVGDTDS 697


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,931,047
Number of Sequences: 28952
Number of extensions: 201336
Number of successful extensions: 492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)