Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0356
(515 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0146 - 12274721-12274989,12275090-12275240 53 2e-07
11_02_0068 + 7991816-7992603,7995209-7997177 29 2.9
07_03_1583 - 27898375-27898436,27898455-27898539,27898621-278987... 28 3.9
09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800 28 5.1
07_03_1367 + 26072270-26072374,26074047-26074724 28 5.1
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504... 28 5.1
01_03_0201 + 13758227-13758760,13758784-13759452 28 5.1
09_05_0010 + 20056968-20058419 27 8.9
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713... 27 8.9
08_02_0666 - 19823490-19823822,19823912-19824185,19824311-19826292 27 8.9
08_02_0648 - 19694538-19696569,19697151-19697998 27 8.9
>06_02_0146 - 12274721-12274989,12275090-12275240
Length = 139
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = +2
Query: 281 DSRGPPVFFYFSGSKLPDGN-SWCPDCVEAEPVVRHYLSEL----DKSIIFVYVDVGDRE 445
D+ G F + N +WCPDC AEPV+ + +K ++ + VGD+
Sbjct: 26 DAEGKVKLLLFLADRDASSNQTWCPDCNVAEPVIYDRVEAAAKGKEKDVVLLRAYVGDKP 85
Query: 446 YWKDKECPFRTDSRSKLMVIPTL 514
W+D P+R D R +L +PTL
Sbjct: 86 TWRDPAHPWRADPRFRLTGVPTL 108
>11_02_0068 + 7991816-7992603,7995209-7997177
Length = 918
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 377 VRHYLSELDKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPT 511
+R YLS DK I + D+ D + WK EC + R ++ T
Sbjct: 255 LREYLS--DKRYIVIVDDIWDMQIWKFIECALVKNCRGSRIITTT 297
>07_03_1583 -
27898375-27898436,27898455-27898539,27898621-27898768,
27899009-27899028,27899135-27899236,27899743-27899812,
27899956-27900012,27902324-27902484,27902742-27902761,
27902997-27903069,27903077-27903169,27903456-27903496,
27903597-27903858
Length = 397
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 372 GSASTQSGHQLLPSGSFEPLK*KNTGGPRESIAR 271
GSA+ S LP+ + P+ + TGGPR + R
Sbjct: 14 GSAAAASSSVSLPASTRAPVLHRTTGGPRRRLQR 47
>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
Length = 863
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 63 YDYHYMYLMIILPNALYRIFINFSIHN 143
+DYH M L L L+RI I F +H+
Sbjct: 204 HDYHLMLLPTFLRKKLHRIKIGFFLHS 230
>07_03_1367 + 26072270-26072374,26074047-26074724
Length = 260
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 314 SGSKLPDGNSWCPDCVEAEPVVRHYLSELDKSI 412
S +KL DG W DC + +P+ + +L+K +
Sbjct: 64 SYNKLIDGKMWLEDCNKEDPLDPTQIQDLEKQL 96
>04_04_1592 -
34649484-34649547,34650118-34650186,34650325-34650444,
34650630-34650742,34650824-34650898,34651224-34651346,
34651427-34651446,34652354-34652410,34652922-34653860,
34653961-34654189,34654296-34654439,34654527-34654601,
34655363-34655433,34656103-34656205,34656407-34656633,
34656791-34656908,34657239-34657369,34657709-34657802
Length = 923
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 375 TGSASTQSGHQLLPSGSFEPLK*KNTGGPRESIARV-YFENSSKPFRST 232
TG+++ +GH L S S + +N G R +I R+ +NS +S+
Sbjct: 328 TGTSTKLNGHSELKSSSSSTMPLQNDSGSRANIGRLSVLQNSENNIKSS 376
>01_03_0201 + 13758227-13758760,13758784-13759452
Length = 400
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 246 VLKNFRNILVQLILVVPLYFFTLAVQNYLMAIAGAP 353
+LK F +Q ++PL+FF + +L + G P
Sbjct: 28 LLKEFEEHNLQFTSIIPLFFFYSYISKFLSDLQGQP 63
>09_05_0010 + 20056968-20058419
Length = 483
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 291 VPLYFFTLAVQNYLMAIAGAPTAWKLNQSSGI 386
+P+ F A +++ + +G P W+L Q G+
Sbjct: 360 IPMPDFRAAAEHFCLPSSGRPMIWRLGQGLGL 391
>09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,
7138413-7138538,7138650-7139619,7139641-7139737,
7140026-7140113,7140336-7140396,7140425-7140447,
7140663-7140776,7141193-7141306,7144731-7144825,
7146506-7146824,7147166-7147309,7147463-7147564,
7147868-7147971,7148121-7148247,7148804-7148845,
7148939-7149091,7149326-7149426,7149807-7150227
Length = 1139
Score = 27.1 bits (57), Expect = 8.9
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +3
Query: 219 KWLLTWI*KVLKNFRNILVQLILVVPLYFFTLAVQNYLMAIAGAPTAWKLNQSSGITLVS 398
+WL + +VL V+ +L VP+ F +L +Q +L+ A + +T +S
Sbjct: 973 QWLKPYTDEVLVELGQQGVKSLLAVPVRFISLTIQEWLVQFAFFFPTSPCDYLLVLTNLS 1032
Query: 399 STKVSFLSMSMLEIENI 449
S +SF+S + +E I
Sbjct: 1033 S--ISFVSEHIETLEEI 1047
>08_02_0666 - 19823490-19823822,19823912-19824185,19824311-19826292
Length = 862
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 63 YDYHYMYLMIILPNALYRIFINFSIHN 143
+DYH M L L L+RI + F +H+
Sbjct: 203 HDYHLMLLPTFLRKRLHRIKLGFFLHS 229
>08_02_0648 - 19694538-19696569,19697151-19697998
Length = 959
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +2
Query: 401 DKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPT 511
+KS + DV ++ WKD +C F +++ + +++ T
Sbjct: 281 NKSYFVLIDDVWSKQAWKDIQCAFPSNNNASRIMMTT 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,722,431
Number of Sequences: 37544
Number of extensions: 244003
Number of successful extensions: 537
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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