Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0356
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   28   5.3  
SB_27272| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_21263| Best HMM Match : Thioredoxin (HMM E-Value=0.00093)           27   9.2  

>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 326  LPDGNSWCPDCVEAEP 373
            +P+GN +CPDC   EP
Sbjct: 1661 IPEGNWFCPDCRPKEP 1676


>SB_27272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 483 LSVLNGHSLSFQYSLSPTST*TKMIXXXXXLR*CLTTGSASTQSGHQLLPSGS 325
           LS L    LSF+Y L P  +  + +      R C+TT + S  S  ++   G+
Sbjct: 102 LSPLRSSKLSFEYLLLPPRSALEAVFTQARARGCVTTPTPSYSSELRICSDGT 154


>SB_21263| Best HMM Match : Thioredoxin (HMM E-Value=0.00093)
          Length = 148

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = +2

Query: 344 WCPDCVEAEPVVRHYLSEL-----DKSIIFVYVD 430
           WCP C +  P+++ +  EL     D  IIFV  D
Sbjct: 36  WCPPCRQFTPILKDFYEELGGEEGDLVIIFVSSD 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,161,469
Number of Sequences: 59808
Number of extensions: 290716
Number of successful extensions: 615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)