Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0356
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42850.2 68418.m05223 expressed protein                             66   1e-11
At5g42850.1 68418.m05222 expressed protein                             66   1e-11
At3g56420.1 68416.m06275 thioredoxin family protein similar to t...    29   1.4  
At5g06690.1 68418.m00756 thioredoxin family protein low similiar...    29   2.5  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    29   2.5  
At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN) i...    29   2.5  
At1g52650.1 68414.m05945 F-box family protein contains F-box dom...    28   3.2  
At2g35160.1 68415.m04313 SET domain-containing protein (SUVH5) i...    27   5.7  
At5g37310.1 68418.m04481 endomembrane protein 70, putative multi...    27   7.5  
At5g04260.1 68418.m00417 thioredoxin family protein low similari...    27   7.5  
At2g17920.1 68415.m02075 expressed protein similar to zinc finge...    27   7.5  

>At5g42850.2 68418.m05223 expressed protein
          Length = 134

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 33/78 (42%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +2

Query: 284 SRGPPVFFYFSGSKLPD-GNSWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREYWKDK 460
           SR    F  F     P  G SWCPDCV AEPV+   L E  + +  +    GDR  W+  
Sbjct: 26  SRSKINFILFLADNDPTTGQSWCPDCVRAEPVIYKTLEEFPEEVKLIRAYAGDRPTWRTP 85

Query: 461 ECPFRTDSRSKLMVIPTL 514
             P+R DSR KL  +PTL
Sbjct: 86  AHPWRVDSRFKLTGVPTL 103


>At5g42850.1 68418.m05222 expressed protein
          Length = 134

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 33/78 (42%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +2

Query: 284 SRGPPVFFYFSGSKLPD-GNSWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREYWKDK 460
           SR    F  F     P  G SWCPDCV AEPV+   L E  + +  +    GDR  W+  
Sbjct: 26  SRSKINFILFLADNDPTTGQSWCPDCVRAEPVIYKTLEEFPEEVKLIRAYAGDRPTWRTP 85

Query: 461 ECPFRTDSRSKLMVIPTL 514
             P+R DSR KL  +PTL
Sbjct: 86  AHPWRVDSRFKLTGVPTL 103


>At3g56420.1 68416.m06275 thioredoxin family protein similar to
           thioredoxin [Nicotiana tabacum] GI:20047; contains Pfam
           profile: PF00085 Thioredoxin
          Length = 100

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 344 WCPDCVEAEPVVRHYLSELDKSIIFVYVDV 433
           WC  C + EPV R   S    S+IFV VDV
Sbjct: 19  WCVPCKKIEPVFRDLASRY-PSMIFVTVDV 47


>At5g06690.1 68418.m00756 thioredoxin family protein low similiarity
           to SP|P34723 Thioredoxin {Penicillium chrysogenum};
           contains Pfam profile: PF00085 Thioredoxin
          Length = 210

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 341 SWCPDCVEAEPVVRHYLSELDKSIIFVYVDV 433
           SWC  C+  +P +    +E +    F YVDV
Sbjct: 128 SWCRKCIYLKPKLEKLAAEYNNRAKFYYVDV 158


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
            binding domain-containing protein contains Pfam profiles
            PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
            binding domain
          Length = 2176

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 323  KLPDGNSWCPDCVEAEPVVRHYL 391
            ++PDGN +CP CV A+ + +  L
Sbjct: 1323 RIPDGNWYCPSCVIAKRMAQEAL 1345


>At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN)
           identical to SP|Q39239 Thioredoxin H-type 4 (TRX-H-4)
           {Arabidopsis thaliana}
          Length = 119

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 341 SWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGD 439
           SWCP C    P+      +   S IF  VDV +
Sbjct: 38  SWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDE 70


>At1g52650.1 68414.m05945 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 465

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 187 IFIYFLNTYKLPTVKLCIEKFMKILYRALGKIII 86
           IF+  L T  L +VKLC++KF      AL ++++
Sbjct: 156 IFLPMLKTLVLHSVKLCVDKFFFRALPALEELVL 189


>At2g35160.1 68415.m04313 SET domain-containing protein (SUVH5)
           identical to SUVH5 [Arabidopsis thaliana] GI:13517751;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA  SUVH5 (SUVH5) GI:13517750
          Length = 794

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 454 LPIFSISNIDIDKNDTFVELTKVMPDDW 371
           LPI +++N+D +K   F+   K++  DW
Sbjct: 551 LPICAVNNLDDEKPPPFIYTAKMIYPDW 578


>At5g37310.1 68418.m04481 endomembrane protein 70, putative
           multispanning membrane protein, Homo sapiens,
           EMBL:HSU94831
          Length = 564

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 270 LVQLILVVPLYFFTLAVQNYLMAIAGAPTAWKLNQSSGITLVSSTKVSFLS 422
           +V LILV+   F T+A+  + +A       W+L  S    L S+T  S  S
Sbjct: 490 IVFLILVIVTAFITVALTYFQLAAEDHEWWWRLPSSLATWLASATDSSSCS 540


>At5g04260.1 68418.m00417 thioredoxin family protein low similarity
           to SP|P29429 Thioredoxin. [Aspergillus nidulans]
           {Emericella nidulans}; contains Pfam profile: PF00085
           Thioredoxin
          Length = 192

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +2

Query: 341 SWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTL 514
           +WC  C+  +P +    +E    + F +VDV           P+R  SR+ +  +PT+
Sbjct: 108 AWCRKCIYLKPKLEKLAAEFYPRLRFYHVDV--------NAVPYRLVSRAGVTKMPTI 157


>At2g17920.1 68415.m02075 expressed protein similar to zinc finger
           protein [Arabidopsis thaliana] GI:976277
          Length = 307

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 318 VQNYLMAIAGAPTAWKLNQSSGITLVSSTKVSFLSMSMLEIENIGR 455
           VQN    I   P AW L       ++  T V FL  S +++ ++ R
Sbjct: 48  VQNLQAIITALPRAWGLTAHVHGRIIDDTYVQFLFQSEMDLLSVQR 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,676,146
Number of Sequences: 28952
Number of extensions: 212399
Number of successful extensions: 545
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)