Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0354
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    64   2e-11
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    29   0.64 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   4.5  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    25   6.0  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   7.9  

>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 26/89 (29%), Positives = 51/89 (57%)
 Frame = +1

Query: 271 NWEDPEYCKYYMVKFCPHDLFVNTRADLGACPKVHDEEVKELFEKADPSYKKSQYVEEFL 450
           ++ D + C+ ++   CPHD+F NT+ DLG CPK+H +++K  +E+A  S+    Y  ++L
Sbjct: 27  HFTDRKVCRSFLCGICPHDIFTNTKMDLGPCPKIHSDKLKSDYERASYSHDYG-YEWDYL 85

Query: 451 RFCKHMINDVERKIQKGKQRLDLMNSKPE 537
              +  ++D  ++I   + R +    + E
Sbjct: 86  EDLERHVDDCNKRIDIAEARREKTKEEEE 114


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +1

Query: 286 EYCKYYMVKFCPHDLFVNTRADLGACPKVHDEEVKELFEKA-DPSYK----KSQYVEEFL 450
           EY KY  V +      +  R D G   +  + +  EL EK  D  Y     KS  V E +
Sbjct: 14  EY-KYSYVNYDKLKKEIKRRNDQGGWSEEDESDFVELLEKELDKVYSFQKNKSAEVMERI 72

Query: 451 RFCKHMINDVERKI 492
           RFC+   ++V R++
Sbjct: 73  RFCEEQTDEVVRRL 86


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 525 VH*IQSLFSFLYFPFYIINHMF 460
           VH I S+F+F+YF    +N++F
Sbjct: 603 VHFIFSVFTFIYFSLVPLNNLF 624


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 381 FIVDFRTSTKISSSINEQIMRTELYHVVFAVLRIFPI 271
           F +D    T  S  +NE ++ + L  VVFA+L   P+
Sbjct: 57  FALDMFAKTNNSFGVNEVLLASVLGSVVFALLSSQPL 93


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +1

Query: 382 EVKELFEKADPSYKKSQYVEEFLRFCKHMINDVERKIQKGKQRLDLMNSKPEGPPMTQAQ 561
           E++  +E +D  Y K  Y+   + +  +   D   K Q+ ++ L     KP   P  +A+
Sbjct: 556 ELRTCYELSD-KYNKDIYIGSTVCYSPNEWLDFFSKFQQPREALKFPEDKPRHIPCLEAR 614

Query: 562 TEKN 573
              N
Sbjct: 615 PSPN 618


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,609
Number of Sequences: 5004
Number of extensions: 40172
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)