Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0354
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0249 - 15816515-15816868,15817749-15817958,15818051-158182... 89 3e-18
02_04_0540 + 23748610-23748930,23749054-23749157,23749889-237500... 52 2e-07
03_06_0641 - 35232858-35232892,35233066-35233290,35233785-352339... 50 2e-06
10_08_0050 + 14469879-14470072,14470620-14471094 29 3.5
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 3.5
12_01_0107 - 843820-846335,846400-846511 28 6.1
02_05_1183 + 34788219-34788533,34788733-34788930,34789010-347893... 28 6.1
02_04_0532 + 23711530-23711755,23712984-23713093,23713204-237152... 28 6.1
09_01_0136 - 2030523-2031062,2032349-2032534,2032642-2032796,203... 27 8.0
08_02_1547 + 27795664-27795674,27795743-27795892,27796182-277979... 27 8.0
07_03_0301 + 16449586-16449671,16450028-16451135 27 8.0
>07_03_0249 -
15816515-15816868,15817749-15817958,15818051-15818245,
15818318-15818393,15819982-15820021,15820155-15820283,
15820363-15820405
Length = 348
Score = 88.6 bits (210), Expect = 3e-18
Identities = 36/85 (42%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +1
Query: 262 KKPNWEDPEYCKYYMVKFCPHDLFVNTRADLGACPKVHDEEVKELFEKADPSYKKSQYVE 441
K+ W+DP+ C +M +FCPHDLFVNT+++LG C K+HD ++KE FE + + E
Sbjct: 27 KEVRWDDPDVCAAFMARFCPHDLFVNTKSNLGPCMKIHDLKLKESFESSPRRETHMRRFE 86
Query: 442 -EFLRFCKHMINDVERKIQKGKQRL 513
E + C+ ++ D++RKI++G++RL
Sbjct: 87 AELAQQCEKLVIDLDRKIRRGRERL 111
>02_04_0540 +
23748610-23748930,23749054-23749157,23749889-23750063,
23750149-23750212,23750867-23750946,23751128-23751287,
23751415-23751476,23751607-23751666,23751824-23751882,
23752194-23752275,23752691-23752740,23752847-23752980,
23753508-23753590,23754070-23754142,23754461-23754477
Length = 507
Score = 52.4 bits (120), Expect = 2e-07
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 18/116 (15%)
Frame = +1
Query: 238 NTDPNEKIKKPNWEDPEYCKYYMVKFCPHDLFVNTRADLGACPKVHDEEVKELFEKADPS 417
N D E +K + D + C+ ++ CPHDLF T+ D+G CPK+H ++++ + PS
Sbjct: 75 NGDVREVSRK--YYDRDVCRLFLAGLCPHDLFQLTKMDMGPCPKMHSLQLRKEYPWRSPS 132
Query: 418 ------------YKKSQ------YVEEFLRFCKHMINDVERKIQKGKQRLDLMNSK 531
Y++++ Y E + +I++ ERKIQ+ +RL+ ++K
Sbjct: 133 NYSCRVTRVYNRYEEAKAKGMDNYDRELEETIERLISECERKIQRALKRLEEDDAK 188
>03_06_0641 -
35232858-35232892,35233066-35233290,35233785-35233929,
35234295-35234406,35234477-35234535,35234981-35235022,
35235372-35235434,35235636-35235697,35236298-35236451,
35236572-35236651,35237646-35237709,35237791-35237959,
35238002-35238114,35238361-35238507
Length = 489
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +1
Query: 238 NTDPNEKIKKPNWEDPEYCKYYMVKFCPHDLFVNTRADLGACPKVHDEEVKE 393
N D E +K + D + C+ ++ CPHDLF T+ DLG CPKVH ++++
Sbjct: 17 NGDVREVSRK--YYDRDVCRLFLAGLCPHDLFQLTKMDLGPCPKVHSLQLRK 66
>10_08_0050 + 14469879-14470072,14470620-14471094
Length = 222
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 477 CRKENTKRKTKIGSNELKTRGPTNDSSTD 563
CR+EN +++G EL+ GP + S D
Sbjct: 122 CRRENLGIGSELGGGELENAGPAHSSGRD 150
>01_07_0112 - 41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 432 LRLLIRWVGFLKKLFDFFIVDFRTSTKISSSINEQIMRTEL 310
L +L W+G L L +F I+D T + SS+ TEL
Sbjct: 1693 LEILPEWLGMLVSLEEFIIIDCPKLTFLPSSMKNLTAITEL 1733
>12_01_0107 - 843820-846335,846400-846511
Length = 875
Score = 27.9 bits (59), Expect = 6.1
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 304 MVKFC-PHDLFVNTRADLGACPKVHDEEVKELFEKADPSYKKSQYVEEFLRFCKHM-IND 477
+V C P ++ V T+ + H E ++L E+ S S EEF+ ++ +ND
Sbjct: 229 IVAICQPDNISVGTKERVQLYEGFHVESHEDLIEELVRSLSLSDDEEEFVDIAENSELND 288
Query: 478 VERKIQKGKQRLDLMNSKPEGP 543
R Q G R L + +GP
Sbjct: 289 ALRS-QMGSCRFSLGSKMNDGP 309
>02_05_1183 +
34788219-34788533,34788733-34788930,34789010-34789359,
34789463-34789619
Length = 339
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 238 NTDPNEKIKKPNWEDPEYCKYYMVKFCPHDLFVNTRADLGA 360
N P+ + + W DPE+C+ V + T A++ A
Sbjct: 144 NRSPDAVLDESCWSDPEFCRQKDVSLLHMYCYAKTMAEMAA 184
>02_04_0532 +
23711530-23711755,23712984-23713093,23713204-23715298,
23716092-23716153,23716236-23716277,23716614-23716673,
23716873-23717010,23717333-23717374,23717452-23717574
Length = 965
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 307 VKFCPHDLFVNTRADLGACPKVHDEEVKELFEKADPSYKKSQYVEEFLRFC 459
+ C H L + R D+ + KVHD E+ K P+ + ++E+ +R C
Sbjct: 762 LSLCGHVLAQSLRTDIESHDKVHDP--MEIVPKGAPTKRLRGFMEKRVRRC 810
>09_01_0136 -
2030523-2031062,2032349-2032534,2032642-2032796,
2032917-2033079
Length = 347
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 244 DPNEKIKKPNWEDPEYCKYYMVKFCPHDLFVNTRADLGA 360
DPN+ + W D EYCK +C + T A+ GA
Sbjct: 148 DPNKPVDDTCWSDLEYCKRTENWYC----YAKTVAEQGA 182
>08_02_1547 +
27795664-27795674,27795743-27795892,27796182-27797906,
27799447-27799546,27799657-27800268,27800399-27800521,
27800905-27801039,27801108-27801209,27801716-27801778,
27801854-27802045,27802121-27802258,27802632-27802694,
27803068-27803466
Length = 1270
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 307 VKFCPHDLFVNTRADLGACPKVHDEEVKELFEKADPSYKKSQYVEEFLRFC 459
V C H + + R+D+ + KVHD E+ K P+ + ++E+ R C
Sbjct: 563 VTLCGHVVAQSLRSDIASVQKVHDP--MEVVPKGAPTKRLRGFLEKGNRRC 611
>07_03_0301 + 16449586-16449671,16450028-16451135
Length = 397
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 343 RADLGACPKVHDEEVKELFEKADPSYKKSQYVEEFLRFCKHMINDVERK 489
+ LG H+E +++LFE+ P + YV E C+ I+ E++
Sbjct: 245 KVGLGKIMNSHEEHMEKLFERLSP-WTPELYVHESHPICQGYIDYFEQR 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,619,007
Number of Sequences: 37544
Number of extensions: 242351
Number of successful extensions: 603
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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