Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0354
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16211| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   8e-08
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)                 33   0.22 
SB_34276| Best HMM Match : CsbD (HMM E-Value=1.5)                      31   0.67 
SB_10828| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)                 28   4.7  
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_27337| Best HMM Match : efhand (HMM E-Value=2.9e-21)                28   4.7  
SB_19779| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  

>SB_16211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 20/36 (55%), Positives = 28/36 (77%)
 Frame = +1

Query: 247 PNEKIKKPNWEDPEYCKYYMVKFCPHDLFVNTRADL 354
           P++K K+ +W D E CK+++  FCP DLFVNTR+DL
Sbjct: 22  PDQKGKRAHWSDSEVCKHFLCGFCPSDLFVNTRSDL 57



 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +3

Query: 183 MAVLAAAQLLDELMGRHREHRSQRKN*KA 269
           MAVL+AA LLDELMG  R+    +K  +A
Sbjct: 1   MAVLSAAALLDELMGSDRDLAPDQKGKRA 29


>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
          Length = 1258

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -1

Query: 447 KLFDILRLLIRWVGFLKKLFDFFIVDFRTSTKISSSINEQIMRTELYHVVFAVL 286
           KLFDI+ LLI ++     LF F  +    +  I   +  +++R + Y +   ++
Sbjct: 735 KLFDIICLLINYISVSASLFSFTAIAMERAYAILKPLKHRLLRKKTYFIGIVII 788


>SB_34276| Best HMM Match : CsbD (HMM E-Value=1.5)
          Length = 119

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +3

Query: 183 MAVLAAAQLLDELMGRHREHRSQRKN*KA 269
           MAVL+AA LLDELMG  R+    +K  +A
Sbjct: 1   MAVLSAAALLDELMGSDRDLAPDQKGKRA 29


>SB_10828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 355 GACPKVHDEEVKELFEKADPSYKKSQYVEEFLRFCK 462
           G  PK+    V  L+ KA      SQY E+F +FCK
Sbjct: 24  GRWPKISCSRVGMLYVKAGAIAIPSQYAEDFGKFCK 59


>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
          Length = 1265

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 469 INDVERKIQKGKQRLDLMNSKPEGPPMTQAQTEK 570
           + DV +K +KGKQR   M  + +   +  A TE+
Sbjct: 584 VKDVPKKKKKGKQRFQEMEKRSDKADLMDAYTER 617


>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 247 PNEKIKKPNWEDPEYCKY 300
           P EK  +PN +DPEY +Y
Sbjct: 862 PAEKAPEPNKDDPEYARY 879


>SB_27337| Best HMM Match : efhand (HMM E-Value=2.9e-21)
          Length = 172

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 325 DLFVNTRADLGACPKVHDEEVKELFEKADPSYKKSQYVEEFLR 453
           D F     D G   K+ D+EVK+LF + D     S   EEFLR
Sbjct: 58  DEFRKGMQDFGT--KLTDDEVKQLFAQFDKDGSGSLDFEEFLR 98


>SB_19779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 333 EQIMRTELYHVVFAVLRIFPIRL 265
           E  M TELYH +FA+L ++P ++
Sbjct: 240 ENWMDTELYHWLFAILDMYPTKV 262


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,855,366
Number of Sequences: 59808
Number of extensions: 282481
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)