Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0353
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    29   0.47 
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    28   1.1  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    27   1.4  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    27   2.5  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   4.4  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   4.4  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    26   4.4  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   5.8  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   5.8  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    25   5.8  
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    25   5.8  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.6  
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    25   7.6  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   7.6  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   7.6  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   7.6  

>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 309 RILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETS 446
           R++  + +K+++ P T DKT    +P D K  N+    I+S P TS
Sbjct: 21  RLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANI----ISSVPSTS 62


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
 Frame = +3

Query: 261 KQAPLLDTTGRTERKSRILRTTLKKYTMRP-NTTDKTV*VHM-PTDTKLPNLRRSKIASD 434
           K+   L   G ++  +   +  LKK  +RP NT+   + +   PT+T  PNL  S+ ++ 
Sbjct: 124 KRIVTLQNDGGSKNTTARKQKQLKKNGLRPLNTSASRIGLSSSPTNTPSPNLPVSQPSAS 183

Query: 435 PETSPARISTRTAKTISSRYVTGQTVTVSTRKTTYLR 545
           P  S  +    +AK I  R    Q + ++     +LR
Sbjct: 184 PHYSGDK---NSAKGIDLRTRVIQLLAIAPETEDFLR 217


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 384 PTDTKLPNLRRSKIASDPETSPARISTRTAKTISSRYVT 500
           P  + LP+   S I+ D ETS A + + +  T +S  VT
Sbjct: 273 PKASLLPSTTESSISKDHETSQAPLGSESVDTQASENVT 311


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 169 KQPTIHRSSIRWPHRCLTIDQIQRPEVS 252
           K P +   ++RW +RCL +  +  P  S
Sbjct: 444 KNPQVKTETLRWLNRCLQLTDVCPPRAS 471


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 344  HRILLQRSPQYSRFPFRSSSSVQEWGLL 261
            HR+++Q +P Y R        V E+ LL
Sbjct: 2067 HRLIIQMAPDYDRLTLLQKVEVFEYALL 2094


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 19/80 (23%), Positives = 36/80 (45%)
 Frame = +2

Query: 269 PTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVRSGDVT 448
           PT+    +  K +     Y +  Y+ ++   +D   +    Y    + K+ NR++ GDV+
Sbjct: 334 PTIDEMVQEEKLLNKQRKYGQN-YEYAKQIAKDKTYSNNLDYLDENAGKLSNRMKRGDVS 392

Query: 449 GSYIYKDGKNDLIKVRYWSD 508
            + I   G  DL K+ +  D
Sbjct: 393 LAQISSGG--DLKKINHVLD 410


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 265 RPHSWTLLEERKGNREY*GLR*RSIRCVPIPRTRRSRCIC 384
           R + WT   + KG   Y  L+   +  +  P TRR R  C
Sbjct: 59  RQNCWTKRNDPKGLTYYQLLKPSEVEILSRPETRRKRMAC 98


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 385 LRIPNSRICEGRKSRQIRRRHRLVYLQGRQKRS 483
           L+ PN R    +K  + RRR R + LQ  Q  S
Sbjct: 516 LKSPNQRTANAKKRLEERRRRRKLKLQELQLNS 548


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 143 EPEEAQKYLNSPPFTDPQLGGRTAVLPLI--KYNDP 244
           E E+   YL+S P T P+L   +AV   I  +Y DP
Sbjct: 180 ENEDLAIYLDSSPVTQPELDQSSAVEESISTRYLDP 215


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +2

Query: 119 IDVFQIDIEP---EEAQKYLNSPPFT 187
           ID+  +D  P   E AQKY+ + PFT
Sbjct: 195 IDIVAVDASPSRVEFAQKYVGAKPFT 220


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 302 EIENTEDYVEEVYDASQYHGQDGL--GAYAYGYQTPESAK 415
           E+  +ED V  V    + + ++ L  G YAYGY+TP + +
Sbjct: 10  ELTTSED-VNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQ 48


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -1

Query: 166 VLLCFFGLDVNLE---DVDAGFRRRRHNCDHAENRHNTQHVSSFFV 38
           V++CF   + + E   D  A + R++ NCD   N H  Q   ++ +
Sbjct: 279 VIVCFTMPETHSETLLDFKARYLRKKTNCDKWYNEHEHQRDPAYAI 324


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 308 ENTEDYVEEVYDASQYHGQDGLGAYAYG 391
           ++TEDYV ++Y+AS    +     +AYG
Sbjct: 175 QSTEDYVYDIYEASS--KEPNKPTFAYG 200


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 119 IDVFQIDIEPEEAQKYLNSPPF 184
           +D F +++ P+EA KYL S  F
Sbjct: 599 VDEFGVELGPKEAYKYLLSHQF 620


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 331 RSIRCVPIPRTRRSRCICLRIPNSRI---CEGRKSRQIRRRHRLVYLQGRQKRS 483
           R +  +     R+   + +R+PN RI   C+G  S  I+R  RL  L  R+ +S
Sbjct: 836 RILNIIEFTSKRKCMSVIVRMPNGRICLFCKGADSAIIKRL-RLSNLAKRKDKS 888


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -1

Query: 319 LSILDFLSVLPVVSKSGAC--FNCA 251
           L +LDFL   P +S+ G C   NCA
Sbjct: 36  LRLLDFLEYYPGLSEIGCCNELNCA 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,532
Number of Sequences: 5004
Number of extensions: 48908
Number of successful extensions: 173
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)