Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0353
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.52 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.1  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   2.8  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   3.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   3.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   3.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.5  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 233 YNDPRFRTVEAGPTLGHYWKNG 298
           YN  RFR +  G  + ++W NG
Sbjct: 388 YNMVRFRNLVKGTKIDNWWDNG 409



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/38 (21%), Positives = 17/38 (44%)
 Frame = +2

Query: 320 DYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVR 433
           DY  E     +Y+G   +  + Y Y+   + +  N ++
Sbjct: 247 DYGNEAISKREYNGIGAVIEFKYSYEISNAFRGNNNLK 284


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 282 CPRVGPASTVRNLGSLYLINGKTAVRPP 199
           C  V  A+T RN+ + +LI  +    PP
Sbjct: 391 CREVEAAATARNVVAPFLIGSRRTSPPP 418



 Score = 21.0 bits (42), Expect = 8.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 426 ASDPETSPARISTRTAKTISSRYVTGQTVTVSTRK 530
           AS   T PA  S   A + ++  +T  T T+ TR+
Sbjct: 231 ASATGTGPATPSAVVATSNATAAMTTGTTTIPTRR 265


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 401 EFGIRRHMHLDRLVRGIG 348
           ++ + RH H+ RLV  IG
Sbjct: 104 KYWVERHKHIVRLVTAIG 121


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 322 VLSILDFLSVLPVVSKSGACF 260
           V +ILD  S   VVSKSG  F
Sbjct: 298 VQNILDTQSSAKVVSKSGVLF 318


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 322 VLSILDFLSVLPVVSKSGACF 260
           V +ILD  S   VVSKSG  F
Sbjct: 298 VQNILDTQSSAKVVSKSGVLF 318


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 322 VLSILDFLSVLPVVSKSGACF 260
           V +ILD  S   VVSKSG  F
Sbjct: 298 VQNILDTQSSAKVVSKSGVLF 318


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 380 MHLDRLVRGIGTHRILLQRSPQYSRFPFRSSSSV 279
           MH D L     T    L  + Q ++ P  SSS+V
Sbjct: 505 MHKDSLGLSTATSTCSLAVAKQQNQVPLTSSSNV 538


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,134
Number of Sequences: 438
Number of extensions: 3516
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)