Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0353
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42200.1 68415.m05222 squamosa promoter-binding protein-like ...    29   1.6  
At5g62780.1 68418.m07881 DNAJ heat shock N-terminal domain-conta...    29   2.8  
At2g37390.1 68415.m04585 heavy-metal-associated domain-containin...    28   3.7  
At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein si...    28   4.9  
At2g26410.1 68415.m03169 calmodulin-binding family protein simil...    28   4.9  
At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to SP|P1...    28   4.9  
At5g15730.1 68418.m01840 serine/threonine protein kinase, putati...    27   6.5  
At3g42820.1 68416.m04484 hypothetical protein hypothetical prote...    27   6.5  
At1g19220.1 68414.m02392 transcriptional factor B3 family protei...    27   6.5  
At1g13710.1 68414.m01611 cytochrome P450 family protein similar ...    27   8.6  

>At2g42200.1 68415.m05222 squamosa promoter-binding protein-like 9
           (SPL9) identical to squamosa promoter binding
           protein-like 9 [Arabidopsis thaliana] GI:5931673;
           contains Pfam profile PF03110: SBP domain
          Length = 375

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +2

Query: 161 KYLNSPPFTDPQLGGRTAVLPLIKYNDPRFRTVEAGPTLGHYWKNGKEIENTEDYVEE-- 334
           +YLN P          + VL L +Y +P    + +G  +G +  +    ++   Y+E+  
Sbjct: 301 QYLNPPWVFKDNDNDMSPVLNLGRYTEPDNCQISSGTAMGEFELSDHHHQSRRQYMEDEN 360

Query: 335 --VYDASQYH 358
              YD+S +H
Sbjct: 361 TRAYDSSSHH 370


>At5g62780.1 68418.m07881 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam PF00226: DnaJ
           domain; similar to dnaJ (GI:144832) [Clostridium
           acetobutylicum]
          Length = 207

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 282 CPRVGPASTVRNLGSLYLINGKTAVR 205
           CP  G  S + N+ S  +ING+T +R
Sbjct: 104 CPNCGQNSAMTNISSTEVINGRTFIR 129


>At2g37390.1 68415.m04585 heavy-metal-associated domain-containing
           protein contains Pfam PF00403: Heavy-metal-associated
           domain; similar to copper homeostasis factor (CCH)
           (ATX1) (GB:U88711) (TIGR_Ath1:At3g56240) [Arabidopsis
           thaliana]
          Length = 259

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 414 RSKIASDPETSPARISTRTAKTISSRYVTGQTVTVSTRKTT 536
           R  + SDP++    +    AKT+ +    G+  T++ +KTT
Sbjct: 134 RYLLGSDPDSITGSVDQDPAKTVEAEAPAGEDKTLTEKKTT 174


>At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein
           similar to fructan 1-exohydrolase IIa GI:13940209 from
           [Cichorium intybus]; contains Pfam profile PF00251:
           Glycosyl hydrolases family 32
          Length = 550

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 377 AYAYGYQTPESAKVENRVRSGDVTGSYIYKDGKNDLI--KVRYWSDRD 514
           +Y  G +T  +++V  ++  G+    Y++ DG+N +I   +  WS R+
Sbjct: 494 SYGVGGKTVITSRVYPKLAIGEAAKLYVFNDGENGVIMTSLEAWSMRN 541


>At2g26410.1 68415.m03169 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 516

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 418 RKSRQIRRRHRLVYLQGRQKRSHQ 489
           R S + + RHRL+  +G QK +HQ
Sbjct: 201 RLSAENKTRHRLIQQKGHQKENHQ 224


>At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to
           SP|P14713 Phytochrome B {Arabidopsis thaliana}
          Length = 1172

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 287 SSVQEWGLLQLCETSGRCI*SMVRQRCGHLIE 192
           SS++ WGL+    TS RCI   +R  C  L++
Sbjct: 392 SSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQ 423


>At5g15730.1 68418.m01840 serine/threonine protein kinase, putative
           similar to protein-serine/threonine kinase [Nicotiana
           tabacum] gi|505146|dbj|BAA06538
          Length = 434

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -3

Query: 413 SQIREFGIRRHMHLDRLVRGI-GTHRILLQRSPQY-SRFPFRSSSSVQEWGLLQL 255
           +++ +FG+ + M LDR+  G+ GTH  +    P Y S   +   S +  +G++ L
Sbjct: 251 AKVADFGLSKEMVLDRMTSGLKGTHGYM---DPTYISTNKYTMKSDIYSFGVIIL 302


>At3g42820.1 68416.m04484 hypothetical protein hypothetical proteins
           - Arabidopsis thaliana
          Length = 906

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 404 ESAKVENRVRSGDVTGSYIYKDGKNDLIKVRYWSDRDGFHQEDNLP 541
           ESA++++ +  G   G Y+   G N+L +  Y    D F  +DN P
Sbjct: 617 ESAEIKDNLAVGIPEGEYMDLSGTNELARCAY---NDVFTGQDNQP 659


>At1g19220.1 68414.m02392 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profile: PF02309 AUX/IAA family
          Length = 1086

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +2

Query: 122 DVFQIDIEPEEAQKYLNSPPFT---DPQLGGRTAVLPLIKYNDPRFRTVEAG 268
           D   I I    A    NS PFT   +P+      V+PL KYN   +  V  G
Sbjct: 242 DSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLG 293


>At1g13710.1 68414.m01611 cytochrome P450 family protein similar to
           cytochrome P450 78A1 (SP:P48420) GI:349717 from [Zea
           mays]
          Length = 517

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = +2

Query: 116 GIDVFQIDIEPEEAQKYLNSPPFTDPQLGGRTAVLPLIKYNDPRFRTVEAGPTLGHYWKN 295
           G   F I  EPE A++ L+S  F D  +  + +   L+ +     R +   P  G YW+N
Sbjct: 91  GFSRFVISSEPETAKEILSSSAFADRPV--KESAYELLFH-----RAMGFAP-YGEYWRN 142

Query: 296 GKEIENT 316
            + I +T
Sbjct: 143 LRRISST 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,640,424
Number of Sequences: 28952
Number of extensions: 270105
Number of successful extensions: 863
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)