Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0352
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    52   5e-08
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    36   0.003
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.38 
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    29   0.38 
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    29   0.38 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.5  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    27   2.0  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   2.7  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   3.5  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    26   4.7  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    25   6.2  

>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 28/78 (35%), Positives = 44/78 (56%)
 Frame = +3

Query: 336 WAVLEDYVKEGRVKQLGVADVGGGCLRVLHAWSRVRPAIAQINLASCCVVPPALHAFCRA 515
           W +LE+ V EG++  LGV++ G   L+ L +   V P   QIN+   C +P  L  F   
Sbjct: 162 WKLLEEKVGEGKIGTLGVSEFGVNELQRLISSVNVVPESTQINIGQNCKLPNDLLNFADR 221

Query: 516 NDVQLLTHADPPNILSEA 569
           + ++L  H+DP  +LSE+
Sbjct: 222 HHLKLFFHSDPSALLSES 239


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +3

Query: 336 WAVLEDYVKEGRVKQLGVADVGGGCLR-VLHAWSRVRPAIAQINLASCCVVPPALHAFCR 512
           W  LE  V+EG+++ +GV++ G   ++ +L +  ++ P + QI L   C     +  +C 
Sbjct: 121 WKALEKGVEEGKLRAIGVSNFGPHHIQELLDSHPKIIPCVNQIELHPFCSQQKVVD-YCE 179

Query: 513 ANDVQLLTHA 542
           +  +QL  +A
Sbjct: 180 SKGIQLAAYA 189


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -3

Query: 544 SACVSSWTSLARQNACRAGGTTQHEARLICAMAGRTRDHACSTLRQPPPTSATPSCFTRP 365
           S   +S TS++  ++  A  +T   +      +  T   + ST+  PPPT++ PS FT  
Sbjct: 648 STTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTT--SSSTVSTPPPTTSFPSTFTTS 705

Query: 364 SFT*SS 347
             T SS
Sbjct: 706 FITSSS 711


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +3

Query: 324 IKVLWAVLEDYVKEGRVKQLGVADVGGGCLRVLHAWSRVRPAIAQINL 467
           I+  W  +E+ ++ G+V+ +G+++     L  +   ++V+P I Q+ L
Sbjct: 144 IEETWQAMEELLETGKVRYIGISNFNNEYLDRVLKIAKVKPTIHQMEL 191


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +3

Query: 324 IKVLWAVLEDYVKEGRVKQLGVADVGGGCLRVLHAWSRVRPAIAQINL 467
           I+  W  +E  ++ G+V+ +G+++     L  +   ++V+PA+ Q+ L
Sbjct: 145 IEETWKAMEKLLETGKVRHIGLSNFNDTNLERILKVAKVKPAVHQMEL 192


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 454  RRSTWPRAAWSRRPCTRSAAPTTSSCSHTPTRRIYYRKPHRKL 582
            R S W     +    T+S +P TS   HT    +Y  K  RK+
Sbjct: 2631 RLSDWSTEQDTLEKATKSLSPFTSLRRHTADALLYLNKTQRKM 2673


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 336 WAVLEDYVKEGRVKQLGVADVGGGCLRVLHAWSRVRPAIAQINLAS 473
           W  L  + KEGR+ ++GV++     L  + +     PAI Q+  ++
Sbjct: 122 WRALLQHQKEGRINKIGVSNYNIHHLEEIISLGLPLPAINQVEFSA 167


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 183 NEADLRNSYSAKTSPISLGSNVAKIPSTEIEADS 284
           NE    +S SAK  P+S+    + +P++ +E +S
Sbjct: 260 NETPASSSSSAKARPVSVPDMSSPVPASSVEYES 293


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
 Frame = +3

Query: 84  ESLENVF--TALQTEY----IDNVILSYNP-DFLNTVEAGNEADLRNSYSAKTSPISLGS 242
           E+LE+ F   AL  +Y    IDN+    +P D     E G   D  +  + K    +L +
Sbjct: 313 ENLESYFMMVALLIKYNFISIDNIWAHLSPSDEELGKELGKYKDKLDEQTFKAKGNAL-T 371

Query: 243 NVAKIPSTEIEADSEADARKCEAILPGIK 329
             A +P  EIE     D +K EA+ P IK
Sbjct: 372 MAAPLPDDEIEDGETMDGQKAEAV-PEIK 399


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +3

Query: 264 TEIEADSEADARKCEAILPGIKVLWAVLEDYVKEGRVKQLGVADVGGGCLRVLHAWSRVR 443
           T+   D       CEA++PG+K   A+++  V EG +  + +     G L +LH   R +
Sbjct: 263 TKFPNDKRFGLEGCEAMVPGMK---ALIDRSVDEG-ISNIVIGMAHRGRLNLLHNIVR-K 317

Query: 444 PAIA 455
           PA A
Sbjct: 318 PAQA 321


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 184 LPASTVFKKSGLYERI 137
           LP+STVF + GLY  I
Sbjct: 246 LPSSTVFSREGLYSSI 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,672
Number of Sequences: 5004
Number of extensions: 45886
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)