Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0352
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14311| Best HMM Match : Beach (HMM E-Value=9.1e-13) 32 0.40
SB_17224| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_2295| Best HMM Match : C1_1 (HMM E-Value=2.5) 31 0.69
SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37) 29 3.7
SB_8177| Best HMM Match : TSP_1 (HMM E-Value=6e-38) 29 3.7
SB_37389| Best HMM Match : Protamine_P1 (HMM E-Value=0.33) 28 4.9
SB_6891| Best HMM Match : Bac_chlorC (HMM E-Value=3.7) 28 4.9
SB_46122| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14) 28 4.9
SB_47161| Best HMM Match : rve (HMM E-Value=1.8e-22) 28 6.4
SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_20518| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=7.4) 27 8.5
>SB_14311| Best HMM Match : Beach (HMM E-Value=9.1e-13)
Length = 580
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 448 PSRRSTWPRAAWSRRPCTRSAAP 516
P +R WPRA+ R+P TRS+ P
Sbjct: 298 PDKRRAWPRASLPRQPRTRSSRP 320
>SB_17224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 935
Score = 31.1 bits (67), Expect = 0.69
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +1
Query: 451 SRRSTWPRAAWSRRPCTRSAAPTTSSCSHTPTRR 552
S R WPR SRR R+ APT S SHT R
Sbjct: 123 SCRRRWPRGRASRRDA-RACAPTMPSASHTHQSR 155
>SB_2295| Best HMM Match : C1_1 (HMM E-Value=2.5)
Length = 363
Score = 31.1 bits (67), Expect = 0.69
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -3
Query: 178 ASTVFKKSGLYERITLSMYSVCKAVNTFSSDSLQCNRAVFIDEDLDANLQIL 23
A V K + L+ER+ + +V K VN +DSL+ VF+ E + N Q L
Sbjct: 209 AGPVAKSAKLFERLLNCLINV-KRVNEMDADSLKREFQVFVTETIHRNPQTL 259
>SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3
Query: 87 SLENVFTALQTEYIDNVILSYNPDFLNTVEAGNEADLRNSYSAKTSPISLGSNVAKIPST 266
SL V + ++ + SY PD L+T E D R + S + P++L +PST
Sbjct: 966 SLPYVTPSYLDRHVAALYHSYKPDALSTAPEPLEIDTRPASSLGSYPVTLRKRTPYLPST 1025
>SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 436 ASVPPSRRSTWPRAAWSRRPCTRS---AAPTTSSCSHTPT 546
A VPPSRRS SRR RS AP + C TP+
Sbjct: 117 APVPPSRRSDLTPVPLSRRSDLRSDWTPAPPSKICGRTPS 156
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 445 PPSRRSTWPRAAWSRRPCTRSAAPTTSSCSHTP 543
PPS+RS W A SRR R+ AP + TP
Sbjct: 2 PPSQRSDWTPAPPSRR-SDRTPAPPSRRSDRTP 33
>SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1189
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 526 WTSLARQNACRAGGTTQHEARLICAMAGRTRDHACSTLRQPPPT 395
+T L R+N + GT ++ GR + + S R+PPPT
Sbjct: 825 YTILVRRNGEKVNGTATNQTLEASKSLGRHQSNTRSKPRRPPPT 868
>SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 165 NTVEAGNEADLRNSYSAKTSPISLGSNVAKIPSTEIEADSEADARKCEAIL 317
+ + + + A N+ SAKTS S SN+A S + S A A A L
Sbjct: 113 SNIASSDIASSANASSAKTSSASASSNIASSASASSDVASSAIASSASASL 163
>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
Length = 599
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 165 NTVEAGNEADLRNSYSAKTSPISLGSNVAKIPSTEIEADSEADARKCEAIL 317
+ + + + A N+ SAKTS S SN+A S + S A A A L
Sbjct: 369 SNIASSDIASSANASSAKTSSASASSNIASSASASSDVASSAIASSASASL 419
>SB_8177| Best HMM Match : TSP_1 (HMM E-Value=6e-38)
Length = 950
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/50 (28%), Positives = 18/50 (36%)
Frame = +1
Query: 382 SAWRTWVAAA*GCCTRGPASVPPSRRSTWPRAAWSRRPCTRSAAPTTSSC 531
S W W C G A++ +R+ P A PC A SC
Sbjct: 139 SDWSAWSRCPQACGISGGANIQRTRQCNNPPAMNGGEPCKGDAVEVVKSC 188
>SB_37389| Best HMM Match : Protamine_P1 (HMM E-Value=0.33)
Length = 273
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 141 LSYNPDFLNTVEAGNEADLRNSY-SAKTSPISLGSNVAKIPSTEIEADSEADA 296
+ + D N + D+ N + KT ++ G +K+P+ +E DSE+D+
Sbjct: 46 IKWQTDHYNKESERKKRDVFNGFRKLKTGIVTHGGRRSKLPARFMETDSESDS 98
>SB_6891| Best HMM Match : Bac_chlorC (HMM E-Value=3.7)
Length = 433
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 379 SSAWRTWVAAA*GCCTRGPASVPPSRRSTWPRAAWSRRPCTRSAAPTTS 525
S+AW+T +A GC R S PR + RP R +AP+ S
Sbjct: 354 STAWQTGSSAR-GCAPRISGGRRKGGSSAPPRGGTAERPPPRQSAPSRS 401
>SB_46122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 743
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 141 LSYNPDFLNTVEAGNEADLRNSY-SAKTSPISLGSNVAKIPSTEIEADSEADA 296
+ + D N + D+ N + KT ++ G +K+P+ +E DSE+D+
Sbjct: 46 IKWQTDHYNKESERKKRDVFNGFRKLKTGIVTHGGRRSKLPARFMETDSESDS 98
>SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)
Length = 635
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = -3
Query: 562 DNIFGGSACVSSWTSLARQNACRAGGTTQHEARLICAMAGRTRDHACSTLRQPPP 398
+++ G C+S WT + C +G R+ M G T DH Q P
Sbjct: 195 NHVTGLCRCISGWTGKRCERPCDSGYYGDECKRVCQCMNGATCDHVTGRCDQRCP 249
>SB_47161| Best HMM Match : rve (HMM E-Value=1.8e-22)
Length = 1046
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 431 VPRPSRHRADQPGLVLRGPAGPARVLPRQRRPAAHTRRPAEYI 559
VP P+ + D P + P PA V P +R P H R +Y+
Sbjct: 1004 VPAPAEDQDDVPD---QDPPTPADVTPPRRYPHDHARTRDDYV 1043
>SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -1
Query: 216 WLNNYSLDLLRCRPPLCSRNPDCMRGSRCLCTPFVKL 106
WL Y D+L+CR P P M GS C KL
Sbjct: 316 WLLRYMEDILKCRRPGKYTVPSKMPGSYRTCGTHEKL 352
>SB_20518| Best HMM Match : Alpha-2-MRAP_N (HMM E-Value=7.4)
Length = 494
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +2
Query: 494 PARVLPRQRRPAAHTRRPAEYIIGSRIEN 580
PA V+P++RRP + A++I+GSRI++
Sbjct: 115 PADVVPKKRRPFS-----ADFILGSRIQH 138
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,436,174
Number of Sequences: 59808
Number of extensions: 386504
Number of successful extensions: 1284
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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