Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0352
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-8|AAK85458.1|  276|Caenorhabditis elegans Hypothetical ...    61   5e-10
Z71181-2|CAA94895.1|  301|Caenorhabditis elegans Hypothetical pr...    37   0.012
U55368-5|AAA97992.2|  333|Caenorhabditis elegans Hypothetical pr...    37   0.012
AL110482-3|CAB60336.1|  339|Caenorhabditis elegans Hypothetical ...    33   0.20 
U29154-2|AAA68418.2|  220|Caenorhabditis elegans Hypothetical pr...    31   0.80 
U50068-4|AAB37733.1|  287|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical...    27   7.4  
Z70284-14|CAA94285.4|  422|Caenorhabditis elegans Hypothetical p...    27   9.8  
U41107-1|AAC71166.1|  220|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   9.8  

>AC006627-8|AAK85458.1|  276|Caenorhabditis elegans Hypothetical
           protein E01A2.1 protein.
          Length = 276

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 30/90 (33%), Positives = 45/90 (50%)
 Frame = +3

Query: 279 DSEADARKCEAILPGIKVLWAVLEDYVKEGRVKQLGVADVGGGCLRVLHAWSRVRPAIAQ 458
           D E++  +       +K L+  +E  V+   +  +GV+D     L+ +     V+P+I  
Sbjct: 127 DGESEEDENNRWFEKVKPLYTYMEKLVETSEIASIGVSDFSARQLKTIIDHFDVKPSINH 186

Query: 459 INLASCCVVPPALHAFCRANDVQLLTHADP 548
           + L  CC VPP L A    NDVQLL H DP
Sbjct: 187 VRLDGCCQVPPELQALANDNDVQLLVHNDP 216


>Z71181-2|CAA94895.1|  301|Caenorhabditis elegans Hypothetical
           protein K07C5.2 protein.
          Length = 301

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 18/72 (25%), Positives = 38/72 (52%)
 Frame = +3

Query: 327 KVLWAVLEDYVKEGRVKQLGVADVGGGCLRVLHAWSRVRPAIAQINLASCCVVPPALHAF 506
           K++W  LE   + GRV+ +GV++     L  +  ++++RP + Q       +  P L  F
Sbjct: 141 KIVWQTLEKAKESGRVRSIGVSNYEVYHLVEMFEYAKIRPVLNQYEYQP-YLTRPTLKKF 199

Query: 507 CRANDVQLLTHA 542
           C  N++ + +++
Sbjct: 200 CDLNNIVVQSYS 211


>U55368-5|AAA97992.2|  333|Caenorhabditis elegans Hypothetical
           protein T08H10.1 protein.
          Length = 333

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +3

Query: 336 WAVLEDYVKEGRVKQLGVADVGGGCLRVLHAWSRVRPAIAQINLASCCVVPP--ALHAFC 509
           W  LE   KEG++K LGV++     L+ L+  + V+PA  Q+    C +  P   L A C
Sbjct: 145 WRALEKLYKEGKLKALGVSNFSCNQLQALYDAAEVKPANQQV---ECHIYWPQQELRALC 201

Query: 510 RANDVQLLTHA 542
           +   V +  +A
Sbjct: 202 KKLGVTVTAYA 212


>AL110482-3|CAB60336.1|  339|Caenorhabditis elegans Hypothetical
           protein Y39G8B.2 protein.
          Length = 339

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 15/65 (23%), Positives = 33/65 (50%)
 Frame = +3

Query: 336 WAVLEDYVKEGRVKQLGVADVGGGCLRVLHAWSRVRPAIAQINLASCCVVPPALHAFCRA 515
           W  LED  + G+++ +G+A+   G +  +     ++PA+ Q+ + +  +    +  FCR 
Sbjct: 149 WKALEDAHRSGKIRSIGLANFNIGQVEQVWTKGLIKPAVLQVEM-NPFLDQEEIRQFCRE 207

Query: 516 NDVQL 530
             + L
Sbjct: 208 KGIIL 212


>U29154-2|AAA68418.2|  220|Caenorhabditis elegans Hypothetical
           protein T07F12.2 protein.
          Length = 220

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 165 SRNPDCMRGSRCLCTPFVKL*IHFQVTPFNATVLSSLMKILTPIF 31
           +R  DC++G  C+C P     +HF VT F  +    L  + T  F
Sbjct: 35  TRKCDCVKGCACVCVP-----VHFPVTVFAHSAFLVLYAVFTAWF 74


>U50068-4|AAB37733.1|  287|Caenorhabditis elegans Hypothetical
           protein C01G5.5 protein.
          Length = 287

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/66 (22%), Positives = 30/66 (45%)
 Frame = +3

Query: 327 KVLWAVLEDYVKEGRVKQLGVADVGGGCLRVLHAWSRVRPAIAQINLASCCVVPPALHAF 506
           K  W  LE    EG+++ +GV++     +  + ++  + P + QI           L A+
Sbjct: 129 KDTWIALEKLHAEGKIRSIGVSNYEPHHIEEMRSYITIEPQVNQIEYHP-HFQRKVLRAY 187

Query: 507 CRANDV 524
           C  N++
Sbjct: 188 CNKNEI 193


>Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical
           protein C46F11.4 protein.
          Length = 811

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = -3

Query: 550 GGSACVSSWTSLARQNACRAGGTTQHEARLICAMAGRTRDHACSTLRQPPPTSATPSCFT 371
           GG A  + +  L  Q +CR GG    +  +  A +  T   + S+    P + A  +   
Sbjct: 682 GGGATGAQFDPLKEQKSCRGGGNQTVDGMIRNAQSFATSSSSSSSSSSGPASGANRAQML 741

Query: 370 RPSFT*SSKT 341
           + +F  S +T
Sbjct: 742 KSAFQKSFQT 751


>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
            protein Y38C9A.1 protein.
          Length = 1484

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 410  PEGAARVVPRPSRHRADQPGLVLRGPAGPARVLPRQRRPAA 532
            P+  A +V RP  HR   P +  R  A  AR  P   +P+A
Sbjct: 1416 PQQQAHLVQRPQAHRLSAPAMQQRPQAAAAR-QPETPQPSA 1455


>Z49074-2|CAE48829.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 101 IHSFTNGVHRQRDPLIQSGFLEHSGGRQRSRSKE*LFSQN 220
           I SF+NGV  +      S  L  +G    SRSKE + S +
Sbjct: 33  IQSFSNGVSLEEGKQASSSLLRDTGQPSSSRSKEAISSSS 72


>Z49073-9|CAE48845.1|  807|Caenorhabditis elegans Hypothetical
           protein ZK970.1b protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 101 IHSFTNGVHRQRDPLIQSGFLEHSGGRQRSRSKE*LFSQN 220
           I SF+NGV  +      S  L  +G    SRSKE + S +
Sbjct: 33  IQSFSNGVSLEEGKQASSSLLRDTGQPSSSRSKEAISSSS 72


>AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical
           protein Y54G2A.13 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -3

Query: 538 CVSSWTSLARQNACRAGGTTQHEARLICA--MAGRTRDHACSTLRQPPPTSATPSCFTRP 365
           C S+ TS+   ++  +   TQ    L     +   T     +T   PPPT+ TP+   +P
Sbjct: 114 CKSASTSVVNDSSNTSATATQTTTPLTTTFTLENATTKEKVTTPTPPPPTTTTPTTTLKP 173

Query: 364 S 362
           +
Sbjct: 174 T 174


>Z70284-14|CAA94285.4|  422|Caenorhabditis elegans Hypothetical
           protein K07F5.14 protein.
          Length = 422

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 237 GSNVAKIPSTEIEADSEADARKCEAILPGIKVLWAVLEDYVKEGRVKQLGVADVGGGCL- 413
           G N+ KI  T+ +A+   +  K E  L  +KV      D + + ++K L         + 
Sbjct: 310 GENLKKIEPTQSKAEPSGNVDKIEKSLLKVKVSTKFFVDPLSDEKIKSLAANFRRTQTVE 369

Query: 414 RVLHAWSRVRPAIAQI 461
           +V+  W+  R AI ++
Sbjct: 370 KVIDKWAPHRDAIFKL 385


>U41107-1|AAC71166.1|  220|Caenorhabditis elegans Hypothetical
           protein F55C12.4 protein.
          Length = 220

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -2

Query: 545 VGVCEQLDVVGAAERVQGR---RDHAARGQVDLRDGGTD 438
           + VC+Q D VG     +GR   R   A G+V    GG D
Sbjct: 174 LAVCQQHDTVGGVSMPRGREQPRRRQAAGKVKTTTGGDD 212


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 174  PLCSRNPD-CMRGSRCLCTP 118
            P+C + P+ C  G RCL TP
Sbjct: 1876 PICQKQPNWCHNGGRCLDTP 1895


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,344,379
Number of Sequences: 27780
Number of extensions: 275580
Number of successful extensions: 904
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)