Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0351
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 29 0.30
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 26 2.8
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 26 2.8
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 3.7
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 26 3.7
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 4.9
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 6.5
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 25 8.6
SPAC22H12.01c |mug35|SPAC23G3.13c|sequence orphan|Schizosaccharo... 25 8.6
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 8.6
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 8.6
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 25 8.6
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.30
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 499 YIILQQLSQPFAGFRNIN 446
Y+ LQ L++P+ GFRNIN
Sbjct: 533 YVSLQILNKPYVGFRNIN 550
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 256 GDLLADWSSLGAMASELVTLVVLL 185
G + DW + G + EL+ LVV+L
Sbjct: 77 GGCIIDWHTCGLFSEELIDLVVVL 100
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 26.2 bits (55), Expect = 2.8
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 248 QVTTG*GNRTEETAEAAKISQIPVDPDSSGNADGYPRTGRFQGTSPGSSWLSFRTSSGDL 427
+V G G R ++ EA K+ + P SGNA Y TG+ + L R +S DL
Sbjct: 177 EVINGLGER-DDYLEAFKLPVCMI-PGGSGNAFSYNATGQLKPALTALEILKGRPTSFDL 234
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 255 PQAEETGPKRLLKLQKYHRFLSTLTPQEMPMATRGLAVSKG 377
PQA+ + RLL + +F+S+ +P E P + + LA+ G
Sbjct: 140 PQAKRSS-SRLLSTDAFSQFISSFSPPEKP-SMKDLALFHG 178
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 377 TSPGSSWLSFRTSSGDLTETGKHIDVPEASKWLAKLL 487
T G+ F++ SG ETG+ I+ KW +++
Sbjct: 639 TGDGNDICEFQSRSGFCVETGRFINALNNEKWSKQVI 675
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.4 bits (53), Expect = 4.9
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 292 FSSLFGPVSSACGDLLADWSSLGAMASELVTLVVLLMCPAYFIFVRL 152
FSSL+ V S C L D +S+ +++ L+ L+ LM +F+ L
Sbjct: 2745 FSSLW-EVLSECLSALRDHTSITHVSTVLLPLIESLMVICRLVFIEL 2790
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 6.5
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 344 RHFLRSQGRQESVIFLQLQQSLRSGFLSLW 255
RHFLR I L + L G LS+W
Sbjct: 211 RHFLRDVAFLTGTILLVIMFVLHDGSLSIW 240
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 349 LPEDWPFPRDQSREFMAVFPDIVRG 423
+P P P Q+ F+ F DIV G
Sbjct: 323 VPSAMPVPNAQNESFVKSFTDIVHG 347
>SPAC22H12.01c |mug35|SPAC23G3.13c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 407 RTSSGDLTETGKHIDVPEAS 466
R SSGDLT T K DV S
Sbjct: 125 RDSSGDLTSTDKERDVSPVS 144
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 24.6 bits (51), Expect = 8.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 189 C*CARRTSFLYACINFSKLFFVENIFVVLQYVIN 88
C C S L+AC +S L F+ + V+ YV N
Sbjct: 561 CKCFSEMSPLFACSTYSALAFI-LLQVISSYVTN 593
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 183 ISKTTSVTNSDAMAPRLDQSASKSPQAEETGPKR 284
+S TSV S ++ SAS SP + KR
Sbjct: 264 VSSATSVAASSTISSATSSSASASPTSSSVSGKR 297
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 24.6 bits (51), Expect = 8.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 357 LG*PSAFPEESGSTGICDIFAASAVSSVRFPQPVVTCSPTGPASGP 220
+G PS+ + S + AAS +S PQ + + P+G S P
Sbjct: 172 IGIPSSNIDSSQFLPVSRAIAASEISPSSSPQLLTSFLPSGSVSNP 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,032
Number of Sequences: 5004
Number of extensions: 42357
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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